Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0099
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   120   1e-27
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   120   1e-27
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    31   0.87 
At2g47550.1 68415.m05934 pectinesterase family protein contains ...    31   1.1  
At1g76010.1 68414.m08825 expressed protein                             30   1.5  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.6  
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P...    29   3.5  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    29   3.5  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    29   3.5  
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S...    29   3.5  
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S...    29   3.5  
At1g53120.1 68414.m06015 RNA-binding S4 domain-containing protein      29   4.6  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    28   6.1  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   6.1  
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    28   6.1  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  120 bits (289), Expect = 1e-27
 Identities = 55/94 (58%), Positives = 59/94 (62%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH     
Sbjct: 64  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNV 123

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPSFP 536
                                ARG  ++  P  P
Sbjct: 124 NMKRHAIVSAIAATAVPALVMARGHKIENVPEMP 157



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/71 (47%), Positives = 48/71 (67%)
 Frame = +2

Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 691
           IE +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I 
Sbjct: 150 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 209

Query: 692 RKGPLIIFNKD 724
           RKGPL++F  +
Sbjct: 210 RKGPLVVFGTE 220



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
 Frame = +1

Query: 85  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  120 bits (289), Expect = 1e-27
 Identities = 55/94 (58%), Positives = 59/94 (62%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH     
Sbjct: 63  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNV 122

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPSFP 536
                                ARG  ++  P  P
Sbjct: 123 NMKRHAIVSAIAATAVPALVMARGHKIENVPEMP 156



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 33/71 (46%), Positives = 48/71 (67%)
 Frame = +2

Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 691
           IE +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I 
Sbjct: 149 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 208

Query: 692 RKGPLIIFNKD 724
           RKGPL+++  +
Sbjct: 209 RKGPLVVYGTE 219



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 250 KE 255
           K+
Sbjct: 61  KK 62


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYGYHHHGHAEF 307
           HH   Y  H    YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At2g47550.1 68415.m05934 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 560

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -2

Query: 739 ASQTLILVED--YEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLV 566
           A  T+  +ED  +  SLT+D    +  T  STKTL L   +D+   L A   ++     +
Sbjct: 93  AKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDVHTFLSAAITNEQT--CL 150

Query: 565 DLLDFVGYNQGKLGNLFNNCPL 500
           + L       G  G+LFN+  L
Sbjct: 151 EGLKSTASENGLSGDLFNDTKL 172


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 377
           QG G     +  G GR   R  R RGGG  R G G F N   G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 100 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 246
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
           (PTPA) family protein similar to Protein phosphatase 2A,
           regulatory subunit B' (PP2A, subunit B', PR53 isoform)
           (Phosphotyrosyl phosphatase activator) (PTPA)
           (Swiss-Prot:Q28717) [Oryctolagus cuniculus]
          Length = 392

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 361 PKAP*PDLWVPPPRTRGIRATARPVPHDS-ALVW*PAP 251
           P A  P++  PPP  R IRA A  +PH+S A++  P P
Sbjct: 46  PLASFPEM-SPPPNYRPIRAPAINLPHNSQAIILSPVP 82


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 374 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 472
           WW +V     LA+ APS   P  +  L  SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 374 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 472
           WW +V     LA+ APS   P  +  L  SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496


>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1050

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 383
           +G+G + +    G GR   R    +GGG H+ G+G      +GGR
Sbjct: 15  EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59


>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1048

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 383
           +G+G + +    G GR   R    +GGG H+ G+G      +GGR
Sbjct: 15  EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59


>At1g53120.1 68414.m06015 RNA-binding S4 domain-containing protein
          Length = 320

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -2

Query: 706 EGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQGKL 527
           E SL +D    A F ++ +K + L+  KD+R       ++ ++    D++   G  + K+
Sbjct: 242 EASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKI 301

Query: 526 GNL 518
           G +
Sbjct: 302 GEI 304


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 225 LEAALLREQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 395
           +  AL+R +  G + +AE   + + + ++P   G G    G+   G FGN   GG  F  
Sbjct: 76  MAVALIRRR-MGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134

Query: 396 TKPW 407
              W
Sbjct: 135 ISKW 138


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 151 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 246
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 579 CLVLLISWTLSATTKGSSGIFS 514
           CLVLL+S   +A TK  SGIF+
Sbjct: 9   CLVLLVSILRAAVTKPDSGIFT 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,915
Number of Sequences: 28952
Number of extensions: 370748
Number of successful extensions: 1269
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)