Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0098
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   6.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 539 RRVTCPSCP 565
           +R+TCP CP
Sbjct: 229 KRLTCPKCP 237


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +1

Query: 91  VGPALVEAPIVPSPVHVGTPR 153
           + P+     ++P P+H   PR
Sbjct: 55  LSPSSAHTVLIPQPLHPSVPR 75


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 161 VQERGVPTWTGDG 123
           VQE G+  W  DG
Sbjct: 396 VQETGIENWWSDG 408


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 282 ITGETARLFSTFDC 241
           + GET RLF+  +C
Sbjct: 496 LPGETLRLFTCMEC 509


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 282 ITGETARLFSTFDC 241
           + GET RLF+  +C
Sbjct: 503 LPGETLRLFTCMEC 516


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,215
Number of Sequences: 336
Number of extensions: 2222
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)