Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0098
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.68 
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    28   0.90 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   1.2  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   2.7  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    26   4.8  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   4.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   6.3  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.4  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 92  SVLP*SKLPSSHPQST--SGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEKS 262
           S+LP S  PSS P S+  S        TPL  +      +AS+TP+ SV    S    S
Sbjct: 280 SLLP-SSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATS 337


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 113 LPSSHPQSTSGPLVPGQLTPLVHILININDAASATPV 223
           +PSS  +S SGP +P    PL+   I+I  + SA+PV
Sbjct: 415 VPSSPSKSQSGPSLPA--NPLLQTDISITYSQSASPV 449


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 89  MSVLP*SKLPSSHPQSTSGPLVPGQLTPLVHILININDAASATPVESV 232
           M++LP + + +   ++T+ P+     TP+V  +I     A  TP E V
Sbjct: 190 MTILPMAAMTTPMEETTTTPMEETTTTPMVETMITPMVEAMTTPTEVV 237


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = +1

Query: 67  RGHYESPDVGPALVEAP----IVPSPVHVGTPRSWTTYPSRPHSY*HQRCCQRY 216
           +G  E     P L E P    I+ S  H G    W T  +RP +  H+  C  +
Sbjct: 278 QGPLECATFNPYLYEDPFQKSIIASAAHDGCVSIWNTACARPMAVIHELSCSSF 331


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 358 TITGATLGPSANNYRARYYDGRI 290
           +IT ATL P A ++    YDG +
Sbjct: 317 SITAATLSPDATHFYTASYDGTV 339


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 431 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGQQLPG 312
           H   G   +VT+  WAR  + G SH    +  ++    PG
Sbjct: 542 HGKFGSLNYVTSSTWARQEHNGFSHQSPRFITTMLSLKPG 581


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 85  PDVGPALVEAPIVPSPVHVGTPRSWTTYPSRP 180
           P V P + EAP VP P          + P RP
Sbjct: 592 PPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRP 623


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 470 DEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVS 360
           ++ +   H G V  +H  + G+V   + A  HN  VS
Sbjct: 28  EKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,991
Number of Sequences: 5004
Number of extensions: 32247
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)