Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0098
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 29 2.8
05_01_0141 - 937428-937717,938483-938705 29 2.8
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 29 3.7
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 6.5
08_02_0826 - 21583507-21583555,21584000-21584679 28 6.5
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 27 8.6
01_01_0983 + 7775045-7776328 27 8.6
01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282 27 8.6
>12_02_0137 +
14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -1
Query: 360 PRSQGLH*VPRPTITGLGTMMAGSAMITGETARLFSTFDCSGSTLSTGVALAA 202
P + GLH R + G+G M SA T + S S VALA+
Sbjct: 86 PTAPGLHGFKRVCLVGVGNNMPSSAAACRSTGETIAAVAKSAQARSAAVALAS 138
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 452 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 342
GH+G + H GH G + H H GG+ H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 452 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 342
GH+G GGH GH + GH+GG+ H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 92 SVLP*SKLPSSHPQSTSGPLVPGQLTPLVHILININDAASATPVES 229
+ LP PSSH S+S + PL + + N ++ TPV++
Sbjct: 39 AALPFFSFPSSHLSSSSSSPIAATPPPLTPVSVPANASSPETPVDA 84
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 455 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 354
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -3
Query: 388 GLGATMAGSATITGA--TLGPS-ANNY---RARYYDGRISNDHGRNSQAFLNI*LFRFDA 227
G G + AGS+ +GA GP A +Y RA Y G D G + ++ +
Sbjct: 118 GGGGSSAGSSAESGAGSNAGPGGAGSYAGSRAGSYAGSNGGDGGSGAGSYAGSSAGSYAG 177
Query: 226 FNGGSAGS 203
NGG AGS
Sbjct: 178 SNGGGAGS 185
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 452 GHNGRVSHDHGGHQ-GHVTNVHWARGHNGGVSHDHRGYTRS 333
GH ++S D HQ H N H +G NG HD + + ++
Sbjct: 647 GHR-QMSQDQYHHQQNHHQNYHGRQGMNGNQYHDRQNHNQN 686
>01_01_0983 + 7775045-7776328
Length = 427
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 85 PDVGPALVEAPIVPSPVHVGTPRSWT 162
P G L+ AP PSP G RSWT
Sbjct: 70 PSAGLVLLVAPPPPSPDDSGDLRSWT 95
>01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282
Length = 404
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 85 PDVGPALVEAPIVPSPVHVGTPRSWT 162
P G L+ AP PSP G RSWT
Sbjct: 68 PSAGLVLLVAPPPPSPDDSGDLRSWT 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,210
Number of Sequences: 37544
Number of extensions: 293367
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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