Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0098
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.24 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.24 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 395  VHWARGHNGGVSHDHRGYT 339
            +HW  GHNGG S    GYT
Sbjct: 1422 LHWKSGHNGGAS--LTGYT 1438



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 464  HWARGHNGRVS 432
            HW  GHNG  S
Sbjct: 1423 HWKSGHNGGAS 1433


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 395  VHWARGHNGGVSHDHRGYT 339
            +HW  GHNGG S    GYT
Sbjct: 1418 LHWKSGHNGGAS--LTGYT 1434



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 464  HWARGHNGRVS 432
            HW  GHNG  S
Sbjct: 1419 HWKSGHNGGAS 1429


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 310 RYYDGRISNDHGRNSQAFLN 251
           RYY  R+SND G  S   L+
Sbjct: 268 RYYLERLSNDMGEVSYVSLD 287


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 310 RYYDGRISNDHGRNSQAFLN 251
           RYY  R+SND G  S   L+
Sbjct: 268 RYYLERLSNDMGEVSYVSLD 287


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 64  KRGHYESPDVG 96
           KRG YE P VG
Sbjct: 610 KRGKYEEPTVG 620



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 467 EHWARGHNGR-VSHDHG 420
           E+ +RGH+G+  SH HG
Sbjct: 391 ENNSRGHSGQSSSHHHG 407


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 67  RGHYESPDVGPAL 105
           RGH E   VGPA+
Sbjct: 142 RGHIEDDYVGPAM 154


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 337 GPSANNYRARYYDGRISN 284
           G SAN+   R YD  +SN
Sbjct: 14  GASANSEAKRLYDDLLSN 31


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 223 NGGSAGSIVDVNKNVDERGKLSRN 152
           N     S++D N  VD   +++RN
Sbjct: 296 NSQGPSSVIDTNTGVDYFTQINRN 319


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 596 NNGGVSPRPTGDTMDTSPDEQLG 528
           NNG  SP  T      SP+ ++G
Sbjct: 129 NNGYASPMSTSSYDPYSPNSKIG 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,714
Number of Sequences: 438
Number of extensions: 2626
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)