Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0098
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05440.2 68415.m00575 glycine-rich protein 32 0.25
At2g05440.1 68415.m00574 glycine-rich protein 32 0.25
At3g50970.1 68416.m05581 dehydrin xero2 (XERO2) / low-temperatur... 32 0.33
At2g05510.1 68415.m00583 glycine-rich protein 32 0.33
At3g63100.1 68416.m07087 glycine-rich protein 30 1.0
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 27 7.2
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 27 7.2
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 27 9.5
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -2
Query: 476 VTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 342
V E + GH G H GG GH GHNGG H GY
Sbjct: 38 VQPEGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 452 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 357
GH G H HGGH G H G+ GG H
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 422 GGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGQQLPG 312
GGH GH GH GG H H G+ G L G
Sbjct: 45 GGHGGH-------GGHGGGGGHGHGGHNGGGGHGLDG 74
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -2
Query: 476 VTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 342
V E + GH G H GG GH GHNGG H GY
Sbjct: 38 VQPEGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 452 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 357
GH G H HGGH G H G+ GG H
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 422 GGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGQQLPG 312
GGH GH GH GG H H G+ G L G
Sbjct: 45 GGHGGH-------GGHGGGGGHGHGGHNGGGGHGLDG 74
>At3g50970.1 68416.m05581 dehydrin xero2 (XERO2) /
low-temperature-induced protein LTI30 (LTI30) identical
to dehydrin Xero 2 (Low-temperature-induced protein
LTI30) [Arabidopsis thaliana] SWISS-PROT:P42758
Length = 193
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 425 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGQQLPG 312
HG HQ TN + + GGV H+ + T + ++LPG
Sbjct: 81 HGSHQTG-TNTTYGTTNTGGVHHEKKSVTEKVMEKLPG 117
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 392 HWARGHNGGVSHDHRGYTRSLGQQLPG 312
H A G GGV H+ +G T + +QLPG
Sbjct: 54 HGATG-TGGVHHEKKGMTEKVMEQLPG 79
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 464 HWARGHNGRVSHDHGGHQG-HVTNVHWARGHNGGVSHDHRGYTRSLGQQLPG 312
H +G ++ GH G H T + G+ G V H+++ + ++LPG
Sbjct: 139 HEKKGIAEKIKEQLPGHHGTHKTGTTTSYGNTGVVHHENKSTMDKIKEKLPG 190
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -2
Query: 449 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 342
H G H GGH G H GHNGG H GY
Sbjct: 44 HGGHGGHGGGGHYG--GGGHGHGGHNGGGGHGLDGY 77
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 425 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGQQLPG 312
HGGH G H GH GG H H G+ G L G
Sbjct: 44 HGGHGG-----HGGGGHYGGGGHGHGGHNGGGGHGLDG 76
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 464 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGG 366
H GH G H HGGH G H G+ GG
Sbjct: 50 HGGGGHYGGGGHGHGGHNG--GGGHGLDGYGGG 80
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Frame = -2
Query: 455 RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGQ 324
RGH H HG GH+ H + R H G H HRG+ R G+
Sbjct: 90 RGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGR 139
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -2
Query: 464 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLG 327
H G + R D G H+GH H RGH G H G+ R G
Sbjct: 106 HRRHGRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRG 148
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -2
Query: 464 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTR 336
H H H H H GH RGH G H HR + R
Sbjct: 70 HCDHCHGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGR 111
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = -2
Query: 470 DEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 351
D + GH HDH H VT H H G SH H
Sbjct: 183 DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = -2
Query: 470 DEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 351
D + GH HDH H VT H H G SH H
Sbjct: 183 DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 190 NKNVDERGKLSRNEGSRRGLGMGRWELRLGQDR 92
N N++ RG R G G G+GR++ R G+ R
Sbjct: 924 NNNMESRG-FGRGSGRGFGRGVGRFDNRRGRSR 955
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,074
Number of Sequences: 28952
Number of extensions: 197413
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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