Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0095
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    29   0.64 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    28   1.1  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    26   4.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   4.5  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.9  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 316 ECGIRL-TNPSEEDLGLWRCGMETETETHYGFLPVICPWLLD 438
           ECG  L ++PS E+LG+W   ++ E++  + +   +  W LD
Sbjct: 342 ECGTPLYSDPSPEELGIWLHALKYESK-DWSYKTQLPKWALD 382


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -1

Query: 382 FPCRSATDPGLPPKGSSVGSRT--RGWTSRTCRS--LRSRVKRICPLDSA*SDQDFAAGI 215
           FP R   DP +PP    V SRT   G  +R+ R   LRS  +R   + S   + ++  G 
Sbjct: 386 FPRRFERDPTIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGF 445

Query: 214 AELTSAD 194
            ++   D
Sbjct: 446 LKMFRRD 452


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 152 PSVVISCSLTSNVEVRACKFRDPRGKVL 235
           P++ ISC L S++++    F  PR K L
Sbjct: 284 PTLFISCRLLSSIQISYHAFDSPRRKQL 311


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 322 RTRGWTSRTCRSLRSRVKRICPLDSA 245
           RT+ W   TC+ L + VK I  L S+
Sbjct: 277 RTKSWKRATCQQLSNAVKAILHLRSS 302


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +3

Query: 186  TSKSALVSSAIPAAKS*SLHAESRGQIRLTRLRSDLQVRLVQPRVRDPTDEPF 344
            T    L+     AA+   L       I L R+ S L VRL  P   DP  + F
Sbjct: 1876 TKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSF 1928


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 412 VESHSESRFQFPCRSATDPGLPPKGSSVGSRTRGWTSRTCRSLR 281
           ++S ++SR +F  RS   P  PP+G  +   T+G  + + + L+
Sbjct: 66  LQSEAKSR-EFGQRSEPSPPPPPEGIKIKISTKGAGNPSAKKLK 108


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 210 NLQARTSTLLVSEHDMTTEGRSLRTEVCTCLD 115
           N+Q++ +TLL SE  + T+  +L  +  T +D
Sbjct: 805 NMQSQNNTLLESESKLKTDCENLTQQNMTLID 836


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,100
Number of Sequences: 5004
Number of extensions: 47945
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)