Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0095
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0083 + 631196-631675                                             33   0.22 
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    29   3.5  
12_02_0744 - 22704637-22705341                                         27   8.1  
08_02_0917 - 22609543-22609852,22609925-22610266,22610596-226108...    27   8.1  
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    27   8.1  

>01_01_0083 + 631196-631675
          Length = 159

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 460 PCLGFPMCPVTKDK*PVESHSESRFQFPCRSATDPGLPPKGSS 332
           PCL  P  PVT D  P  S   S + +P  S++    PP  SS
Sbjct: 31  PCLLPPPTPVTTDCPPPPSTPSSGYSYPPPSSSSSNTPPSSSS 73


>02_05_1059 +
           33815979-33816235,33816467-33816732,33817149-33817192,
           33817363-33817539,33817638-33817964,33818067-33818192,
           33818518-33818622,33818815-33820125,33820221-33820382,
           33820416-33820517,33820549-33821272,33821358-33821451,
           33821824-33821986
          Length = 1285

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 114 DPDKYRLPCAGNVLRWSYHV 173
           D   Y  PC G +L+W YHV
Sbjct: 923 DEQMYFHPCCGPILQWIYHV 942


>12_02_0744 - 22704637-22705341
          Length = 234

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 349 PPKGSSV--GSRTRGWTSRTCRSLRSRVKRICPLDSA*SDQDFAAGIAE 209
           PP+ S     S +RG  S    S RSR+ RI PL  + S +D AAG  +
Sbjct: 98  PPRSSPAPTSSSSRG-VSPPPTSGRSRIGRIWPLWKSSSAEDIAAGAGD 145


>08_02_0917 -
           22609543-22609852,22609925-22610266,22610596-22610858,
           22611318-22612349
          Length = 648

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = -2

Query: 336 RQSDPALVAGQVGLVGHFGAVLSVSV-LSTPREAIRTLPRGSRNLQARTSTLLVSEHDMT 160
           R +DP L    +G +G FG +    + LS   + + T P  +RN +           ++ 
Sbjct: 188 RSADPDLFFAVLGGLGQFGVITRARIPLSPAPQTVSTTPPPNRNERRPNRPAAADRRELA 247

Query: 159 TEGRSLRTEVCTCLDPA 109
            + R  R    +  D A
Sbjct: 248 LQVRWTRVVYASFADYA 264


>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 319 TRGWTSRTCRSLRSRVKRICPLDSA*SDQDFAAGIAELTSAD 194
           T+G T   C+ L   ++R+C L S   D + ++G   L   D
Sbjct: 761 TKGSTEEKCKILYRAIQRLCSLQSLRVDAEGSSGNGTLKCLD 802


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,988
Number of Sequences: 37544
Number of extensions: 349027
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)