Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0095
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 31 0.67
SB_2311| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038) 30 1.2
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6) 29 2.1
SB_56172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 28 4.8
SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = -1
Query: 436 PVTKDK*PVESHSESRFQFPCRSATDPGLPPKGSSVGSRTRGWTSRTCRSLRSRVKRICP 257
PVTKD+ V S S P R A+ G PP G R R S S + P
Sbjct: 352 PVTKDECLVSSASSGSSTVPLRQASTTGRPPSAQRSGPPARAPGQRIVTSSSSPPMKFNP 411
Query: 256 LDSA 245
+ A
Sbjct: 412 VVDA 415
>SB_2311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = -1
Query: 436 PVTKDK*PVESHSESRFQFPCRSATDPGLPPKGSSVGSRTRGWTSRTCRSLRSRVKRICP 257
PVTKD+ V S S P R A+ G PP G R R S S + P
Sbjct: 60 PVTKDECLVSSASSGSSTVPLRQASTTGRPPSAQRSGPPARAPGQRIVTSSSSPPMKFNP 119
Query: 256 LDSA 245
+ A
Sbjct: 120 VVDA 123
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = -2
Query: 273 LSVSVLSTPREAIRTLPRGSRNLQARTSTLLVSEHDMTTEGRSLRTE 133
L+++V P++A T P+ ++ + TLL S+ + + EG++L T+
Sbjct: 473 LALAVGKEPKDASPTKPQAAKPAAKKRMTLLFSDEEESEEGKALGTK 519
>SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038)
Length = 318
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -2
Query: 429 PRTNNR*KAIVSLGFSFHAAAPQTQVFLRRVRQSDPALVAGQVGLVGHFGAVLSVSVLST 250
PRT R + G SF+ +T+ L DPAL ++ + F S T
Sbjct: 180 PRTLQR--RLREAGLSFNQLVDETRQQLVLHYLRDPALELAEIAFLVGFSEPARYSPRKT 237
Query: 249 PR-EAIRTLPRGSRNLQARTSTLLVSE 172
+ ++IRT PR R+ + T V+E
Sbjct: 238 NKTDSIRTFPRHERSSPTGSYTFAVAE 264
>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 257 RTDTLNTAPK*PTSPTCPATSAGSD*RTLRRKTWVCGAAAWKLKPRL 397
+ D L+TAP+ T PA+S GS TLR++T + W K ++
Sbjct: 987 KPDALSTAPEPLEIDTRPASSLGSYPVTLRKRTPYLPSTNWYKKSKI 1033
>SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6)
Length = 334
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 412 VESHSESRFQFPCRSATDPGLPPKGSSVGSRTRGWTSRTCRSLRSRVKRI 263
+ S SR F P LPP+ S RT+G R RS ++++
Sbjct: 165 INSELSSRLGFSGEPPPPPPLPPQSKSRSKRTQGGRRRRRRSRLDEIRQV 214
>SB_56172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -2
Query: 267 VSVLSTPREAIRTLPRGSRNLQARTSTLLVSEHDMTTEGRSLRTE 133
++V P++A T P+ ++ + TLL S+ + + EG++L T+
Sbjct: 2 LAVGKEPKDASPTKPQAAKPAAKKRMTLLFSDEEESEEGKALGTK 46
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 430 TKDK*PVESHSESRFQFPCRSATDPGLPPKGSSVGSRTRGWTSRTCRSLRSRVKRICPLD 251
T K + H + + Q + TD P + S T T TCR+ R K CPLD
Sbjct: 414 TNSKKISKKHHQDQLQLHEQHQTDNRQPQQAHYNSSLTTEDTP-TCRTCNCRQKNTCPLD 472
>SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 415 PVESHSESRFQFPCRSAT-DPGLPPKGSSVGSRTRGWTSRTCRSLRSR 275
P + SE +F P RS T D PP G SVG R ++LR R
Sbjct: 584 PEQPPSELQFGRPQRSKTPDTESPPTGMSVGKHPSWSIRRHKKNLRKR 631
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 27.9 bits (59), Expect = 6.3
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = -2
Query: 498 VTCIRTQDWLSDNLVLDFRCV-Q*PRTNNR*KAIVSLGFSFHAAAPQTQVFLRRVRQSDP 322
V R ++WL DN V FR + P T+N I S+ H QVF + D
Sbjct: 835 VIAFRVKEWLGDNAVCIFRFLGTSPGTSNTLLTIKSVCEQIH------QVFGLESLKEDV 888
Query: 321 ALVAGQVGLVGHFGAVLSVSVLSTPREAIRTL 226
A LV HF +LS +S R + L
Sbjct: 889 A--EDYTELVRHFHELLSTLSVSAERPLVLVL 918
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,290
Number of Sequences: 59808
Number of extensions: 403870
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -