Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0095
         (577 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020236-1|AAH20236.1|  240|Homo sapiens IGLV4-3 protein protein.      30   6.7  
AJ235670-1|CAA15328.1|   69|Homo sapiens immunoglobulin heavy ch...    29   8.9  

>BC020236-1|AAH20236.1|  240|Homo sapiens IGLV4-3 protein protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 315 VAGQVGLVGHFGAVLSVSVLSTPREA--IRTLPRGSRNLQARTSTLL 181
           + GQVG V  FG    ++VLS P+ A  +   P  S  LQA  +TL+
Sbjct: 117 IDGQVGWV--FGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLV 161


>AJ235670-1|CAA15328.1|   69|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 69

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 280 SEVTYKSDLSSHECGIRLTNPSEEDLGLWRCGMETETETHY 402
           S +T   DLS  +  + LT  +++D+ ++ CG  T    H+
Sbjct: 18  SRITMSVDLSKKQFSLALTXVTDDDMAIYYCGGTTLGVIHF 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,626,404
Number of Sequences: 237096
Number of extensions: 1856006
Number of successful extensions: 5317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5307
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)