Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0095
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50742-2|CAA90616.1|  491|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF273803-1|AAG15152.1|  433|Caenorhabditis elegans nuclear recep...    29   1.8  
Z70270-2|CAA94228.1|  445|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AY305829-1|AAR11974.1|  281|Caenorhabditis elegans nuclear recep...    27   7.2  
AF016438-6|AAZ32805.1|  284|Caenorhabditis elegans Nuclear hormo...    27   7.2  
AF016438-5|AAB65893.2|  408|Caenorhabditis elegans Nuclear hormo...    27   7.2  

>Z50742-2|CAA90616.1|  491|Caenorhabditis elegans Hypothetical
           protein K09A11.2 protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +1

Query: 322 GIRLTNPSEEDLGLWRCGMETETETHYGFLPVICPWLLDTSEIQDKVVTEPILSADTSYV 501
           G+ +TN     L  W  GMET + +    L     +++   E+QDKV  E + +  T+ +
Sbjct: 282 GLDITNLCATVLDFWLAGMETTSNSLRWHL----AFMMKYPEVQDKVRKEILDNVGTARL 337

Query: 502 SSLKVRP 522
            S+  +P
Sbjct: 338 PSMSDKP 344


>AF273803-1|AAG15152.1|  433|Caenorhabditis elegans nuclear receptor
           NHR-56 protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 21  ETIMANGRCLLDYKGVFYLKNSLLQFTLEV-QDPDKYR 131
           ET    G C +D  G+FY K   L+  LE   D +K++
Sbjct: 67  ETFCPIGNCKIDKHGIFYCKKCRLRICLEAGMDANKFQ 104


>Z70270-2|CAA94228.1|  445|Caenorhabditis elegans Hypothetical
           protein C53D6.3 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 433 VTKDK*PVESHSESRFQFPCRSATDPGLPPKGSSVGSRTRGWTSRTCRSLRS 278
           +++++ P    SE RF FP      PG      S+ S T GWT     S+ S
Sbjct: 365 ISREESPHGIISERRFMFP------PGCSESSKSLSSCTSGWTPERIDSISS 410


>AY305829-1|AAR11974.1|  281|Caenorhabditis elegans nuclear receptor
           NHR-56 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 21  ETIMANGRCLLDYKGVFYLKNSLLQFTLEV-QDPDKYR 131
           ET    G C +D  G FY K   L+  LE   D +K++
Sbjct: 39  ETFCPIGNCKIDKHGKFYCKKCRLRICLEAGMDANKFQ 76


>AF016438-6|AAZ32805.1|  284|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 56, isoform b protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 21  ETIMANGRCLLDYKGVFYLKNSLLQFTLEV-QDPDKYR 131
           ET    G C +D  G FY K   L+  LE   D +K++
Sbjct: 42  ETFCPIGNCKIDKHGKFYCKKCRLRICLEAGMDANKFQ 79


>AF016438-5|AAB65893.2|  408|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 56, isoform a protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 21  ETIMANGRCLLDYKGVFYLKNSLLQFTLEV-QDPDKYR 131
           ET    G C +D  G FY K   L+  LE   D +K++
Sbjct: 42  ETFCPIGNCKIDKHGKFYCKKCRLRICLEAGMDANKFQ 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,763,364
Number of Sequences: 27780
Number of extensions: 278201
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)