Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0095
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.7  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 385 QFPCRSATDPGLPPKGSSVGSRTRGWTS 302
           +F C   ++P LP + S      R W+S
Sbjct: 97  KFECSKTSNPCLPHRNSDRDLNIRKWSS 124


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 304 LSSHECGIRLTNPSEEDLGLWRCGMETETET 396
           L   E  +R+ +  +ED G+++C +  + E+
Sbjct: 348 LGLEEAVLRIESVKKEDKGMYQCFVRNDQES 378


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 15  RQETIMANGRCLLDYKGVFYLKNSLLQFTLEVQDPDKYRLPCAGNVLRW 161
           R E I  +G  L D  GVF    SLL   L     + +        L+W
Sbjct: 527 RLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEWFDYAFIPGNLKW 575


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 333 DEPFGGRPGSVALRHG 380
           D P  G+P  + ++HG
Sbjct: 99  DLPISGKPFQIRMKHG 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,269
Number of Sequences: 438
Number of extensions: 3449
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)