Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0095
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30750.1 68415.m03750 cytochrome P450 71A12, putative (CYP71A...    29   2.2  
At5g67440.1 68418.m08503 phototropic-responsive NPH3 family prot...    28   5.1  
At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase f...    28   5.1  
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin...    27   6.8  
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin...    27   6.8  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    27   6.8  
At4g28720.1 68417.m04108 flavin-containing monooxygenase family ...    27   9.0  
At2g30770.1 68415.m03752 cytochrome P450 71A13, putative (CYP71A...    27   9.0  

>At2g30750.1 68415.m03750 cytochrome P450 71A12, putative (CYP71A12)
           Identical to Cytochrome P450 (SP:O49340) [Arabidopsis
           thaliana]; contains Pfam profile: PF00067 cytochrome
           P450
          Length = 503

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 6   SIERQETIMANGRCLLDYKGVFYLKNSLLQFTLEVQ-DPDKYRLPCAGNVLRWSYH 170
           +I+  E I+    CL     +F LK  L +   +V   P  +RLP  GN+ + S H
Sbjct: 3   NIQEMEMILMVSLCLTTLITLFLLKQFLKRTANKVNLPPSPWRLPLIGNLHQLSLH 58


>At5g67440.1 68418.m08503 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 579

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 373 RSATDPGLPPKGSSVGSRTRGWTSRTCRSL 284
           R+ T P LPP GS   SRT   T   C S+
Sbjct: 476 RATTKPSLPPSGSHGSSRTT--TEEECESV 503


>At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 331

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 48  LLDYKGVFYLKNSLLQFTLEVQDPDKYRLPCAGNVLRWSYHVRLRATSKSALV 206
           L D   +F L N  L   LE     K  L     + RW+YH  +   +K+  +
Sbjct: 91  LQDILRIFMLNNLSLTHPLEANGVSKLFLNILELIPRWNYHFEVNEVAKTICI 143


>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 368 AAAWKLKPRLTMAFYRLFVLG 430
           AA W+  PR T  F+R+ +LG
Sbjct: 107 AAGWEATPRQTYGFFRIEILG 127


>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 368 AAAWKLKPRLTMAFYRLFVLG 430
           AA W+  PR T  F+R+ +LG
Sbjct: 107 AAGWEATPRQTYGFFRIEILG 127


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 20  RNHNGKWKMSIGLQGRILLEELTFTVHVRSAGSRQVQTSVRRERPSVVISCSLTSNVE 193
           + H G   +  GL+G++  +E    +H    GS+ + T    E P V I     ++VE
Sbjct: 150 QQHPGNGHLESGLEGKVESKEEVEQLHDSEVGSKDL-TKNNVEEPEVEIESDSETDVE 206


>At4g28720.1 68417.m04108 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana
          Length = 426

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 346 EEDLGLWRCGMETETETHYGFLPVICPWL-LDTSEIQDKVVTE 471
           +E  GLWR    +++E+    +  IC WL + T E  ++V+ E
Sbjct: 125 DETSGLWRVKTVSKSESTQTEVEYICRWLVVATGENAERVMPE 167


>At2g30770.1 68415.m03752 cytochrome P450 71A13, putative (CYP71A13)
           Identical to Cytochrome P450 71A13 (SP:O49342)
           [Arabidopsis thaliana]; similar to Cytochrome P450
           (gi:5713172) [Nicotiana tabacum].
          Length = 503

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 6   SIERQETIMANGRCLLDYKGVFYLKNSLLQFTLEVQ-DPDKYRLPCAGNVLRWSYH 170
           +I+  E I++   CL     +  L+  L +   +V   P  +RLP  GN+ + S H
Sbjct: 3   NIQEMEMILSISLCLTTLITLLLLRRFLKRTATKVNLPPSPWRLPVIGNLHQLSLH 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,205,924
Number of Sequences: 28952
Number of extensions: 270994
Number of successful extensions: 684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)