Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0093
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:...    41   0.036
UniRef50_Q4K2P8 Cluster: Oligosaccharide repeat unit polymerase ...    34   4.1  

>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
           Ymf77 - Tetrahymena pigmentosa
          Length = 1260

 Score = 40.7 bits (91), Expect = 0.036
 Identities = 26/74 (35%), Positives = 39/74 (52%)
 Frame = -1

Query: 459 IIKFDCWTHIHITVELIFVYFYIYFN*DNLISTIH*Q**VIYSFLHSYLKEYNFKAIYIS 280
           IIK+  +  I+I  + I       FN +NLI  I     +IY +L+ Y  +Y  K IYI 
Sbjct: 231 IIKYTIFLLINILKKFINKLIIYVFNINNLIKNIKLS--LIYIYLYIYSNKYINKYIYII 288

Query: 279 LKNEHVKVLKGNFI 238
             N ++ ++K NFI
Sbjct: 289 FNNIYIYIIKYNFI 302


>UniRef50_Q4K2P8 Cluster: Oligosaccharide repeat unit polymerase
           Wzy; n=1; Streptococcus pneumoniae|Rep: Oligosaccharide
           repeat unit polymerase Wzy - Streptococcus pneumoniae
          Length = 483

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 26/81 (32%), Positives = 38/81 (46%)
 Frame = -2

Query: 614 FYLDFFQTRFGRYVSEYRMKYIIMINAAVFYQIEYTKY*QLLLVYV*DICTKLSNSIAGH 435
           FY D +QT FG  + E  +  I + + + +Y  EYT Y    L YV      + N   G 
Sbjct: 351 FYGDVWQTLFGIGLGEAEISKIPIFSGSFYYNYEYTHYYLFTLSYV-----FIENGFIG- 404

Query: 434 IFILQSNLFSFTSTYILIKII 372
           +F     LF F   Y+ +K+I
Sbjct: 405 LF-----LFMFMPIYLALKMI 420


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,655,137
Number of Sequences: 1657284
Number of extensions: 10938034
Number of successful extensions: 21060
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21050
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)