Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0093
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 465 YQIIKFDCWTHIHITVELIFVYFYI 391
           Y      CWT+I+  + L +  FY+
Sbjct: 102 YATCVLSCWTNIYYIIILAWALFYL 126


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 465 YQIIKFDCWTHIHITVELIFVYFYI 391
           Y      CWT+I+  + L +  FY+
Sbjct: 155 YATCVLSCWTNIYYIIILAWALFYL 179


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 487 WFMFKTYVPNYQIRLLDTYSYY 422
           +F+F+TY+P+  I +L   S++
Sbjct: 243 YFVFQTYLPSILIVMLSWVSFW 264


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 139 KFKRDLSHSNHCRSFNKIVLSIGIN 213
           + K+ LS  N  +SFN  VL +GIN
Sbjct: 876 ELKKALSSINE-QSFNHFVLKMGIN 899


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -1

Query: 465 YQIIKFDCWTHIHITVELIFVYFYIYFN 382
           Y      CW +++  V L +  FY + +
Sbjct: 64  YAAAVMSCWMNVYYIVILAWAIFYFFMS 91


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 407 KISSTVI*ICVQQSNLIIWYICLKHKPVVA 496
           K S  V  +C    NL+ W I L    VVA
Sbjct: 406 KYSRIVFPVCFVCFNLMYWIIYLHISDVVA 435


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 407 KISSTVI*ICVQQSNLIIWYICLKHKPVVA 496
           K S  V  +C    NL+ W I L    VVA
Sbjct: 406 KYSRIVFPVCFVCFNLMYWIIYLHISDVVA 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,578
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)