Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0090
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 29 0.40
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 2.1
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 3.7
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 26 4.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 4.9
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 4.9
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.9
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 8.6
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 8.6
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.6
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 29.5 bits (63), Expect = 0.40
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = -2
Query: 446 DGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGD--GSGSLSNDVLKGKSSGSERP 273
D +S F++E+ + E I NS+ S + ++ D S S ++ +++ +
Sbjct: 64 DEYSEFSNEDDEAE----IDNSFADSIPNEPEIPDMQDEYSRDSHSQQSVEEQNNTTNTD 119
Query: 272 QDAAENRISPSAEPTDAETLGTARTKLSRVP 180
+DA+ N S +A+ +D TLG ++ + P
Sbjct: 120 EDASVNEFSVAADISDVNTLGKDNSESTEEP 150
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 375 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 491
AITIGD + L + +++GP V +F + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 317 SNDVLKGKSSGSERPQDAAENRISPSAEPT 228
SND++ S G + + NRI PS+ PT
Sbjct: 59 SNDLVNTLSKGFNETSNMSYNRILPSSPPT 88
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 3.7
Identities = 30/120 (25%), Positives = 47/120 (39%)
Frame = -2
Query: 374 SSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAETLGTARTK 195
+S+ +D + D S L N + S S DAA++ EP GTA K
Sbjct: 868 ASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALKPVEGTADPK 927
Query: 194 LSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*PSRRRGSAALNNSPIS 15
++ T K + S+ V R + ++D G + S + SA L + P S
Sbjct: 928 STKRNHQET-EKTADTDVSSTEPVKRQKTADVNDDVGEEEVKQSVSEQVDSAQLTSEPKS 986
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Frame = -2
Query: 338 GDGSGSLSNDVLKGKSSGSERPQ-DAAENRI-----SPSAEPTDAET 216
G GSG L ND L+ K S P +N + P +P + ET
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVGGPETDPGNMET 163
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = -2
Query: 446 DGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQD 267
D S+ +S E + D +S SSD + D S S S+ + S GS+
Sbjct: 163 DSSSSSSSSESESSSE-DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSS 221
Query: 266 AAENRISPSAEPTDAET 216
++ + S+E D+ +
Sbjct: 222 SSSSESESSSEDNDSSS 238
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = -2
Query: 395 DIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAET 216
D +S SSD + D S S S+ + S GS+ ++ + S+E D+ +
Sbjct: 125 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSS 184
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +3
Query: 297 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 476
A E +A S L N+ + AAIT K + + F +E G V E+I
Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130
Query: 477 LTDYAAE 497
+ DY AE
Sbjct: 131 VGDYVAE 137
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 368 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 255
+ DN ++ SGS + D + + G+E+ +D EN
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLEN 362
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 423 GREVGPAVNNFLEKIPVYLTDYAAEVSRVWSTSPNS 530
G E+G AVN+ L I + D + ++ V+ ++ +S
Sbjct: 134 GEEIGTAVNDTLHAIADEIEDTVSSLNEVFQSAEDS 169
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 424 PKRLIWRLDLTSPI 383
PK LIWR LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 426 REVGPAVNNFLEKIPVYLTDYAAEVSRVWSTSPNSSSTDYCKLLERYL*IKNKLCS 593
R +G NF+ + TD V R STS + S + +LL+ I N +C+
Sbjct: 224 RILGSVSRNFMGLPREFFTDTGNYVLRFTSTSAANGSVNENQLLQAAHGIANDVCA 279
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 353 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAETLGTARTKLSRV 183
D + + D ++ V + + +E QDA NR+ P T E+ K+SR+
Sbjct: 674 DTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESF---EAKVSRI 727
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,112
Number of Sequences: 5004
Number of extensions: 40403
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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