Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0090
(612 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC094885-1|AAH94885.1| 1202|Homo sapiens USP52 protein protein. 33 0.60
BC047686-1|AAH47686.1| 565|Homo sapiens bridging integrator 2 p... 33 0.60
BC024043-1|AAH24043.1| 1198|Homo sapiens ubiquitin specific pept... 33 0.60
AK000783-1|BAA91376.1| 342|Homo sapiens protein ( Homo sapiens ... 33 0.60
AF146531-1|AAD54227.1| 564|Homo sapiens bridging integrator-2 p... 33 0.60
AB107585-1|BAD02263.1| 1198|Homo sapiens PABP1-DEPENDENT POLY(A)... 33 0.60
AB032710-1|BAA88125.1| 565|Homo sapiens breast cancer associate... 33 0.60
AB032698-1|BAA88108.1| 565|Homo sapiens breast cancer associate... 33 0.60
AB014610-1|BAA31685.2| 1206|Homo sapiens KIAA0710 protein protein. 33 0.60
AL135793-9|CAI95134.1| 2948|Homo sapiens transforming, acidic co... 33 1.0
AL135793-7|CAI95132.1| 2675|Homo sapiens transforming, acidic co... 33 1.0
AF528099-1|AAO62630.1| 2948|Homo sapiens transforming acidic coi... 33 1.0
>BC094885-1|AAH94885.1| 1202|Homo sapiens USP52 protein protein.
Length = 1202
Score = 33.5 bits (73), Expect = 0.60
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = -3
Query: 415 LIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKIGFL 245
L W DL +I P++ +LS + A SA RA P +A+ LRT K+GF+
Sbjct: 386 LDWSQDLLPLSLIPVPLTTDTLLS--DWPAANSAPAPRRAPPVDAEILRTMKKVGFI 440
>BC047686-1|AAH47686.1| 565|Homo sapiens bridging integrator 2
protein.
Length = 565
Score = 33.5 bits (73), Expect = 0.60
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 4/147 (2%)
Frame = -2
Query: 467 DLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKS 291
DL + G N +E+ E + S SS D + C G S + KS
Sbjct: 298 DLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEEDEPLPACNGPAQAQPSPTTERAKS 357
Query: 290 SGSERPQDAAEN---RISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 120
P + +SPS +P+ + T RT+ + + +++ ++SA S
Sbjct: 358 QEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAPPSRP 417
Query: 119 RPEKLMMSDAPGGLQEPA*PSRRRGSA 39
P + S P P+ P+ G +
Sbjct: 418 PPPRATASPRPSSGNIPSSPTASGGGS 444
>BC024043-1|AAH24043.1| 1198|Homo sapiens ubiquitin specific
peptidase 52 protein.
Length = 1198
Score = 33.5 bits (73), Expect = 0.60
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = -3
Query: 415 LIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKIGFL 245
L W DL +I P++ +LS + A SA RA P +A+ LRT K+GF+
Sbjct: 386 LDWSQDLLPLSLIPVPLTTDTLLS--DWPAANSAPAPRRAPPVDAEILRTMKKVGFI 440
>AK000783-1|BAA91376.1| 342|Homo sapiens protein ( Homo sapiens
cDNA FLJ20776 fis, clone COL05962. ).
Length = 342
Score = 33.5 bits (73), Expect = 0.60
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 4/147 (2%)
Frame = -2
Query: 467 DLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKS 291
DL + G N +E+ E + S SS D + C G S + KS
Sbjct: 75 DLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEEDEPLPACNGPAQAQPSPTTERAKS 134
Query: 290 SGSERPQDAAEN---RISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 120
P + +SPS +P+ + T RT+ + + +++ ++SA S
Sbjct: 135 QEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAPPSRP 194
Query: 119 RPEKLMMSDAPGGLQEPA*PSRRRGSA 39
P + S P P+ P+ G +
Sbjct: 195 PPPRATASPRPSSGNIPSSPTASGGGS 221
>AF146531-1|AAD54227.1| 564|Homo sapiens bridging integrator-2
protein.
Length = 564
Score = 33.5 bits (73), Expect = 0.60
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 4/147 (2%)
Frame = -2
Query: 467 DLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKS 291
DL + G N +E+ E + S SS D + C G S + KS
Sbjct: 297 DLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEEDEPLPACNGPAQAQPSPTTERAKS 356
Query: 290 SGSERPQDAAEN---RISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 120
P + +SPS +P+ + T RT+ + + +++ ++SA S
Sbjct: 357 QEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAPPSRP 416
Query: 119 RPEKLMMSDAPGGLQEPA*PSRRRGSA 39
P + S P P+ P+ G +
Sbjct: 417 PPPRATASPRPSSGNIPSSPTASGGGS 443
>AB107585-1|BAD02263.1| 1198|Homo sapiens PABP1-DEPENDENT
POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2 protein.
Length = 1198
Score = 33.5 bits (73), Expect = 0.60
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = -3
Query: 415 LIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKIGFL 245
L W DL +I P++ +LS + A SA RA P +A+ LRT K+GF+
Sbjct: 386 LDWSQDLLPLSLIPVPLTTDTLLS--DWPAANSAPAPRRAPPVDAEILRTMKKVGFI 440
>AB032710-1|BAA88125.1| 565|Homo sapiens breast cancer associated
protein BRAP1 protein.
Length = 565
Score = 33.5 bits (73), Expect = 0.60
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 4/147 (2%)
Frame = -2
Query: 467 DLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKS 291
DL + G N +E+ E + S SS D + C G S + KS
Sbjct: 298 DLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEEDEPLPACNGPAQAQPSPTTERAKS 357
Query: 290 SGSERPQDAAEN---RISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 120
P + +SPS +P+ + T RT+ + + +++ ++SA S
Sbjct: 358 QEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAPPSRP 417
Query: 119 RPEKLMMSDAPGGLQEPA*PSRRRGSA 39
P + S P P+ P+ G +
Sbjct: 418 PPPRATASPRPSSGNIPSSPTASGGGS 444
>AB032698-1|BAA88108.1| 565|Homo sapiens breast cancer associated
protein BRAP1 protein.
Length = 565
Score = 33.5 bits (73), Expect = 0.60
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 4/147 (2%)
Frame = -2
Query: 467 DLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKS 291
DL + G N +E+ E + S SS D + C G S + KS
Sbjct: 298 DLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEEDEPLPACNGPAQAQPSPTTERAKS 357
Query: 290 SGSERPQDAAEN---RISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 120
P + +SPS +P+ + T RT+ + + +++ ++SA S
Sbjct: 358 QEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAPPSRP 417
Query: 119 RPEKLMMSDAPGGLQEPA*PSRRRGSA 39
P + S P P+ P+ G +
Sbjct: 418 PPPRATASPRPSSGNIPSSPTASGGGS 444
>AB014610-1|BAA31685.2| 1206|Homo sapiens KIAA0710 protein protein.
Length = 1206
Score = 33.5 bits (73), Expect = 0.60
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = -3
Query: 415 LIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKIGFL 245
L W DL +I P++ +LS + A SA RA P +A+ LRT K+GF+
Sbjct: 391 LDWSQDLLPLSLIPVPLTTDTLLS--DWPAANSAPAPRRAPPVDAEILRTMKKVGFI 445
>AL135793-9|CAI95134.1| 2948|Homo sapiens transforming, acidic
coiled-coil containing protein 2 protein.
Length = 2948
Score = 32.7 bits (71), Expect = 1.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 448 LTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM-MLSARETEAVASATTFSRASPPEAKDL 272
L+ PTS P ++W LT ++AP + L + E SR SPP A L
Sbjct: 910 LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 969
Query: 271 R 269
+
Sbjct: 970 K 970
>AL135793-7|CAI95132.1| 2675|Homo sapiens transforming, acidic
coiled-coil containing protein 2 protein.
Length = 2675
Score = 32.7 bits (71), Expect = 1.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 448 LTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM-MLSARETEAVASATTFSRASPPEAKDL 272
L+ PTS P ++W LT ++AP + L + E SR SPP A L
Sbjct: 637 LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 696
Query: 271 R 269
+
Sbjct: 697 K 697
>AF528099-1|AAO62630.1| 2948|Homo sapiens transforming acidic coiled
coil 2, long isoform protein.
Length = 2948
Score = 32.7 bits (71), Expect = 1.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 448 LTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM-MLSARETEAVASATTFSRASPPEAKDL 272
L+ PTS P ++W LT ++AP + L + E SR SPP A L
Sbjct: 910 LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 969
Query: 271 R 269
+
Sbjct: 970 K 970
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,970,493
Number of Sequences: 237096
Number of extensions: 1478224
Number of successful extensions: 4297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4293
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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