Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0090
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog... 29 2.6
AF016670-9|AAB66107.2| 701|Caenorhabditis elegans Hypothetical ... 29 3.5
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical p... 28 6.0
U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 28 6.0
U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical p... 27 8.0
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 30.7 bits (66), Expect = 0.86
Identities = 26/98 (26%), Positives = 41/98 (41%)
Frame = -2
Query: 305 LKGKSSGSERPQDAAENRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTS 126
L GKS+ + P+ A R T GTA++ + L+ R S +++
Sbjct: 378 LPGKSTKTLNPKPAGSTRSVTPVSTKPPRTFGTAKSVIVSSKPSLSGYNNRANPSPSMSD 437
Query: 125 VTRPEKLMMSDAPGGLQEPA*PSRRRGSAALNNSPISL 12
+ R K M L E A P +R S+ N PI++
Sbjct: 438 L-RTTKSMAGSTTSLLSERA-PKKRSTSSRRNQEPITI 473
>Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical
protein F10B5.4 protein.
Length = 426
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 76 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 180
W+ S ++NF GRVT +F +H Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386
>AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog
protein.
Length = 426
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 76 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 180
W+ S ++NF GRVT +F +H Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386
>AF016670-9|AAB66107.2| 701|Caenorhabditis elegans Hypothetical
protein K02F6.9 protein.
Length = 701
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 417 LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVWSTSPNSSSTDYCKLLERYL 569
+ G E+G A ++F K+ D + + W T NSS+T+Y +L E+ L
Sbjct: 532 VIGHEIGHAFDHFHRKL-----DESGRQQQYWFTETNSSNTEY-ELREKCL 576
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 479 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 336
Q +RD EV+D F EE+D EV D + + D D EG
Sbjct: 28 QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 479 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 336
Q +RD EV+D F EE+D EV D + + D D EG
Sbjct: 28 QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73
>Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 346 SARETEAVASATTFSRASPPEAKDLRTRLKIGFLL 242
S RET + A +T RAS E KD+ R K G L
Sbjct: 25 SVRETLSKAIRSTLGRASSMERKDMPDRPKYGTAL 59
>Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 346 SARETEAVASATTFSRASPPEAKDLRTRLKIGFLL 242
S RET + A +T RAS E KD+ R K G L
Sbjct: 25 SVRETLSKAIRSTLGRASSMERKDMPDRPKYGTAL 59
>U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 9 protein.
Length = 588
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = -2
Query: 386 NSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSA--EPT--DAE 219
+S S D D+D EG+G G+ N ++ + D I P+A +PT D
Sbjct: 330 SSKSSEDSDDHDDSMEGEGGGT-ENFTNDDENGADDYEDDGESTTIKPNAVSQPTILDFV 388
Query: 218 TLGTARTKLSRVP 180
+ KL R+P
Sbjct: 389 ERSKQQNKLMRIP 401
>U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical
protein ZK1290.10 protein.
Length = 412
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 406 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASPPEAK 278
RLD T P+ A P+ L ++ ++ +E + AS T+ A+PP A+
Sbjct: 59 RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLP-AAPPSAQ 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,343,256
Number of Sequences: 27780
Number of extensions: 238659
Number of successful extensions: 759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -