Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0090
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.037
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 33 0.15
At4g39190.1 68417.m05549 expressed protein ; expression support... 32 0.34
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.1
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel... 30 1.4
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel... 30 1.4
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel... 30 1.4
At5g16690.1 68418.m01954 origin recognition complex subunit 3-re... 30 1.4
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 29 1.8
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 2.4
At3g13410.1 68416.m01686 expressed protein 29 2.4
At4g01960.1 68417.m00261 expressed protein 28 4.2
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M... 28 4.2
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 28 5.6
At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.6
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 27 7.4
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 27 7.4
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 27 9.8
At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.8
At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa... 27 9.8
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.037
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -2
Query: 419 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRIS 246
E +E DI N CS +D+ EG+ L N+ L+ +S+GS+ D A NR+
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHNRVD 185
Query: 245 PSAEPTDAETLGT 207
E D L T
Sbjct: 186 -RLESMDENNLAT 197
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 161 CVVSATSAPDST*SWLFPEFQHQSVPLKEKSDFQPRPEVFRFRRTCP*ERR 313
C +S +S P + FP FQH S L E++ F+ + + ++R+ C ER+
Sbjct: 638 CTLSGSSPPVGSLPKSFPPFQHPSHQLLEENGFK-QEKYLKYRKRCLNERK 687
>At4g39190.1 68417.m05549 expressed protein ; expression supported
by MPSS
Length = 277
Score = 31.9 bits (69), Expect = 0.34
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = -2
Query: 377 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAETLGTART 198
C S+ D V E G S D ++ SE +A ++ A+ + + T
Sbjct: 98 CKSNDLYEDFVLESSRRGGFSQDEMRSGEKQSEAENEAKQSITENKAKENEEKQSITE-- 155
Query: 197 KLSRVPT*LTRRKCRELKSSALTSVTRPEKL 105
SRV +T +K + + S ++PEKL
Sbjct: 156 --SRVKKSVTEKKTKRIISEKKVKQSKPEKL 184
>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 435 GPAVNNFLEKIPVYLTDYA-AEVSRVWSTSPNS 530
G VN F E P Y+ DY A +VWS P S
Sbjct: 223 GVIVNTFQELEPAYVKDYTKARAGKVWSIGPVS 255
>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 710
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 532 DELGDVLQTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM 353
DE+ +++ RL S +G F+R LL G + L W LD S + + P S
Sbjct: 526 DEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRT 583
Query: 352 MLSARETEAVA 320
+ + E EA A
Sbjct: 584 VKALTEVEAFA 594
>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 532 DELGDVLQTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM 353
DE+ +++ RL S +G F+R LL G + L W LD S + + P S
Sbjct: 533 DEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRT 590
Query: 352 MLSARETEAVA 320
+ + E EA A
Sbjct: 591 VKALTEVEAFA 601
>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 532 DELGDVLQTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM 353
DE+ +++ RL S +G F+R LL G + L W LD S + + P S
Sbjct: 533 DEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRT 590
Query: 352 MLSARETEAVA 320
+ + E EA A
Sbjct: 591 VKALTEVEAFA 601
>At5g16690.1 68418.m01954 origin recognition complex subunit
3-related / ORC3-related low similarity to SP|Q9UBD5
Origin recognition complex subunit 3 (Origin recognition
complex subunit Latheo) {Homo sapiens}
Length = 556
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -2
Query: 386 NSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAETLG 210
+S+ SSD +ND+ G+ +G L+ V + S P+ A + + S E D +
Sbjct: 17 DSFNSSDTAENDIRASSGNHNGKLTGIVKSKRRIESPSPKIAKRSEVE-SVEEEDGQFFS 75
Query: 209 TARTKL 192
T R K+
Sbjct: 76 TLRFKV 81
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -2
Query: 377 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPS 240
CSS ++ VV EG+G ++ ++ + KS+ E D+ E I+ S
Sbjct: 990 CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEEKWIAMS 1035
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 19 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 186
+GE + +D L R GS + G +F G V + K DF+S S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272
>At3g13410.1 68416.m01686 expressed protein
Length = 321
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 443 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 312
GWSNF E LE D+A + ++ +DV + + +L N
Sbjct: 70 GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113
>At4g01960.1 68417.m00261 expressed protein
Length = 236
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 428 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 267
+ EE DL+V + + ++T N V EGD S ++ N V G+ S GSE+ D
Sbjct: 6 SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60
>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 442
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -3
Query: 439 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASP---PEAKDLR 269
G S PKR + ++ S +A+P M + EA ASA RA P +A ++
Sbjct: 302 GAPSSPKRARTQPEVVSDQRVASPREERMEPATATPEAAASAIGDPRAGPMAEDDAPEVG 361
Query: 268 TRLKIGFLLQRNR 230
L+ G +R+R
Sbjct: 362 AGLQTGLRKRRSR 374
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 449 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 312
+DG+ N A E+ + V + N+Y + V N+V+ G+LS+
Sbjct: 44 LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89
>At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 491
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 435 GPAVNNFLEKIPVYLTDY-AAEVSRVWSTSPNS 530
G VN F E P Y+ DY + ++WS P S
Sbjct: 218 GVIVNTFEELEPAYVRDYKKVKAGKIWSIGPVS 250
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 115 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 207
GRV DV A D S VS+ GTR++ +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 512 PDTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANS 381
PD + + ++++V +L V D W +E IDL++ + NS
Sbjct: 708 PDYSCISNLMKEVSDELCQMVPDSWKVEITETIDLDILSQLLNS 751
>At3g25500.1 68416.m03171 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 1051
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 356 NDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENRISPSAEPTDAE 219
N V G S++ND + SS S P + ISPS P +E
Sbjct: 267 NRVGLPGQNPRSVNNDTISCSSSSSGSPGRSTFISISPSMSPKRSE 312
>At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 435 GPAVNNFLEKIPVYLTDY-AAEVSRVWSTSPNS 530
G VN F E P Y+ DY A +VWS P S
Sbjct: 223 GVIVNTFQELEPPYVKDYKEAMDGKVWSIGPVS 255
>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase
family protein simlar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 585
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -2
Query: 440 WSNFASEEIDLEVRFDIANS-YCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDA 264
W++ + + L+ RF + + + S +D D G S +D + S S RP D
Sbjct: 181 WNDPSIPQPGLDRRFSVCDRVFFSHRPSDFDPSFRGSSSSHRPSDYSRRPSDYSRRPSDY 240
Query: 263 AENRISPSAEPTDA 222
+ S P+D+
Sbjct: 241 SRRPSDYSRRPSDS 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,742,491
Number of Sequences: 28952
Number of extensions: 225038
Number of successful extensions: 741
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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