Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0089
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    33   0.033
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   2.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.8  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    27   3.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   5.1  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +3

Query: 48  PDVGPALVEAPIVPSP--VHVGPLVPG-QLTPLVHILININDAASATPVESVEPEQSNVE 218
           P V P + EAP VP P    V P VP     P V ++     +    P   V PE  +V 
Sbjct: 592 PPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEA-PSVPQPPAAPVVPEVPSVP 650

Query: 219 EKPAVSPVI 245
           ++PAV PV+
Sbjct: 651 QRPAV-PVV 658



 Score = 29.5 bits (63), Expect = 0.54
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +3

Query: 48  PDVGPALVEAPIVPSP--VHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEE 221
           P V P   E P VP P    V P  P    P V  +     +    P   V PE  +V +
Sbjct: 577 PPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQ 636

Query: 222 KPAVSPVIIADLPS 263
            PA +PV + ++PS
Sbjct: 637 PPA-APV-VPEVPS 648


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -3

Query: 331 GGVSHDHRGY--TRSLGNNYRARYYDGRSAMITGETAGFSST 212
           GGV  DHRGY  T     N     + G  A+ T     FS T
Sbjct: 245 GGVPTDHRGYMGTHIFRENAFRHKFKGFCAVFTSAAFSFSGT 286


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/80 (20%), Positives = 31/80 (38%)
 Frame = +3

Query: 3   AVAAAVPAKRGHYESPDVGPALVEAPIVPSPVHVGPLVPGQLTPLVHILININDAASATP 182
           A +A+  +    Y +  + P+   +    S  +         TPL  +      +AS+TP
Sbjct: 264 ATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTP 323

Query: 183 VESVEPEQSNVEEKPAVSPV 242
           + SV    S      + +P+
Sbjct: 324 LSSVSSANSTTATSTSSTPL 343


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 675 HVNPHVEDVIWLFFYILEMISND---NWFHSDWL 583
           H N   E +IWL FY+   I+++   NW    WL
Sbjct: 250 HPNFLAEQLIWLSFYLFGAIASESLLNWTIFAWL 283


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 57  GPALVEA-PIVPSPVHVGPLVPGQLTPLVHILINI 158
           G AL+   PIV S  H+ P   G+L P +H  +++
Sbjct: 781 GAALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,566
Number of Sequences: 5004
Number of extensions: 37125
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)