Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0089
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0188 + 32212297-32212746 30 2.3
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 30 2.3
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818... 29 3.0
06_03_1146 - 28004896-28005554,28005664-28005844 29 4.0
05_01_0141 - 937428-937717,938483-938705 29 4.0
08_01_0498 - 4327502-4328395 29 5.3
11_04_0184 - 14645630-14645905,14645997-14646701 28 7.0
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 28 7.0
02_01_0302 - 2021221-2023305 28 7.0
02_01_0082 - 564946-565075,565164-565384,565662-565916 28 7.0
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 9.3
06_03_0339 - 19687749-19690805 28 9.3
>03_06_0188 + 32212297-32212746
Length = 149
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 3 AVAAAVPAKRGHYESPDVGPALVEAPIVPSPVHVGPLVPG 122
AV +P G P VGP + P++P + P++PG
Sbjct: 56 AVGPGIPVIPGVPGVPVVGPGIPFVPVIPGVPVIVPIIPG 95
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 12 AAVPAKRGHYESPDVGPALVEAPIVPSPVHVGPLVP 119
AA+PA G P VGP + P VP VGP +P
Sbjct: 43 AAIPAIPGVPGVPAVGPGIPVIPGVPGVPVVGPGIP 78
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Frame = +3
Query: 3 AVAAAVPAKRGHYESPDVGPALVEAP-----IVPSPVHVGPLVPGQLTPLVHILININDA 167
AV+ AVP + + +P P AP P+P HV P+ P Q +
Sbjct: 101 AVSPAVPTRPQNAPTPVTPPKEYNAPPPVELTPPAPTHVAPVAPPQAAVENPAPVLPGTP 160
Query: 168 ASATPVESVEPEQSNVEEKPAVSPVIIADLPS 263
A V++ P + P V P + + PS
Sbjct: 161 ALLPSVQAPAPSVARNPNLPIVQPPSVNNPPS 192
>03_05_0524 -
25181432-25181483,25181565-25181691,25181776-25181826,
25182159-25182314,25182405-25182905,25182999-25183713,
25183797-25183867,25183974-25184103,25185706-25186167
Length = 754
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 3 AVAAAVPAKRGHYESPDVGPALVEAPIVPSPVHVGPLVPGQLTPL 137
A++ + P G P + PA VE P++ +P+ P P +TPL
Sbjct: 345 ALSPSPPPLHGSVMPPPLPPATVE-PVISAPMVEPPPPPAMITPL 388
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/86 (26%), Positives = 33/86 (38%)
Frame = +3
Query: 6 VAAAVPAKRGHYESPDVGPALVEAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPV 185
+ V A RG +P P V P+ P P+ P P A+ATP
Sbjct: 127 LVVVVMADRGGRHAPPPSPPAVPPPVAPVPMPSPASSPPSPAP-----------AAATPS 175
Query: 186 ESVEPEQSNVEEKPAVSPVIIADLPS 263
+ P + P+VSP+ A P+
Sbjct: 176 LAPSPVATTPSPSPSVSPMAPAPAPT 201
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 302
GH+G + H GH G + H H GG+ H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 412 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 302
GH+G GGH GH + GH+GG+ H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160
>08_01_0498 - 4327502-4328395
Length = 297
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = -3
Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRSAMITGE 233
G G GG G V + H+ GG+SH H G+ + G G A + G
Sbjct: 168 GEGGCCGGGGGGADGVVIDGHYPLA--GGLSHSHHGHQQQDGGGDVGLMMGGGDAGV-GY 224
Query: 232 TAGFSST 212
AG ST
Sbjct: 225 NAGAGST 231
>11_04_0184 - 14645630-14645905,14645997-14646701
Length = 326
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Frame = -3
Query: 418 ARGHNGRVSHDHGGHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNYRARYYDGRSA 248
A G G HD GG T H G H+G + G T G G
Sbjct: 88 AYGATGTGVHDAGGLMPGHTAGHGTTGTGVHHGAGAGLPAGQTAGYGTTGVTGAQHGAGG 147
Query: 247 MITGETAGFSST 212
+ TG TAG+ +T
Sbjct: 148 LGTGHTAGYGTT 159
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 15 AVPAKRGHYESPDVGPALVEAPIVP 89
A PA GHYE+P +G + AP P
Sbjct: 486 ASPALGGHYEAPMLGDKVERAPSTP 510
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 3 AVAAAVPAKRGHYESPDVGPALVEAPIVPSPVHVGPLVPGQLTP 134
A ++ P +RG Y P P+ P PSP P PG TP
Sbjct: 402 APVSSPPRRRGPYPQP---PSSSPTPSYPSPSSSYPAPPGSNTP 442
>02_01_0082 - 564946-565075,565164-565384,565662-565916
Length = 201
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 690 CKLYFHVNPHVEDVIWLFFY 631
CKL HV P+ +D++W +Y
Sbjct: 144 CKLIGHVKPNPDDLLWCKYY 163
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 415 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 314
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = -3
Query: 397 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDG----RSAMITGET 230
V + G H HV A G+ G + R + ++ GN+ +A G R AM
Sbjct: 262 VHANFGSHNAHVETKRGADGNEAGGLKNKRKFAKATGNSSKASSVAGSKKRRKAMFESSE 321
Query: 229 AGFSST 212
+ S T
Sbjct: 322 SSASDT 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,543
Number of Sequences: 37544
Number of extensions: 279969
Number of successful extensions: 1054
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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