Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0089
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05510.1 68415.m00583 glycine-rich protein                          35   0.067
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami...    31   0.83 
At3g63100.1 68416.m07087 glycine-rich protein                          31   1.1  
At2g05440.2 68415.m00575 glycine-rich protein                          31   1.1  
At2g05440.1 68415.m00574 glycine-rich protein                          31   1.1  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    30   1.5  
At1g27090.1 68414.m03302 glycine-rich protein                          30   1.9  
At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like fami...    29   3.4  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    28   5.9  
At2g05530.1 68415.m00585 glycine-rich protein                          28   5.9  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    28   5.9  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   5.9  

>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 409 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 278
           H G   H  GGH G   + H   GHNGG  H   GY    G +Y
Sbjct: 44  HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 278
           GH G   H HGGH G     H   G+ GG    H G+    G +Y
Sbjct: 54  GHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGHYGGGGGHY 92


>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 771

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 313 HRGYTRSLGNNYRARYYDGRSAMITG--ETAGFSSTFDCSGSTLSTGVALAASLMLIRMW 140
           H   T SLG+ ++  YY+ R   +T   + AGF   F      L TG  L + L +  +W
Sbjct: 300 HIHQTLSLGDTFKQYYYNNRDLQLTSDFQIAGF---FIVEDRVLRTGGGLISKLEVETLW 356

Query: 139 TRGVS 125
              V+
Sbjct: 357 DTAVT 361


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
 Frame = -3

Query: 415 RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 278
           RGH     H HG   GH+ H  +    R    H G   H HRG+ R  G  +
Sbjct: 90  RGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 281
           G + R   D G H+GH    H  RGH  G    H G+ R  G +
Sbjct: 110 GRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRGGH 150


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 317
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -3

Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 302
           GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 46  GHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 317
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -3

Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 302
           GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 46  GHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 45  SPDVGPALVEAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEK 224
           SP V  +    P +PSPV+  P+    L+P V+    I       PV    P    V  K
Sbjct: 29  SPPVYKSPEHKPTLPSPVYTPPVYKPTLSPPVYTKPTIPPPVYTPPVYKHTPSPP-VYTK 87

Query: 225 PAVSPVI 245
           P + P +
Sbjct: 88  PTIPPPV 94


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 415 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 254
           +   GR     GG  G   N    RG  GG  +  +  Y +S GN Y+  YY+ R
Sbjct: 340 QNQRGRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392


>At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 789

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 15  AVPAKRGHYESPDVGPALVEAPIVPSPVHVGPLV-----PGQLTPLVHILINI 158
           A P +R   E+ D G  LV A ++ +   VGPLV      G+  PLVH L N+
Sbjct: 3   AKPKRRIVTENGDTGEDLVLATLIGNGDDVGPLVRHAFEMGRPEPLVHQLKNV 55


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 36  HYESPDVGPALVEAPIVPSPVHVGPLVP 119
           HY SP   P    +P  PSP   GPL P
Sbjct: 452 HYSSPPPPPVHHSSPPPPSPEFEGPLPP 479


>At2g05530.1 68415.m00585 glycine-rich protein 
          Length = 115

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = -3

Query: 412 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRSAMITGE 233
           G+NG   H+ GG+ G         G+NGG      GY R  G  YR  +   R     GE
Sbjct: 56  GYNGGGGHNGGGYNG-------GGGYNGGGHGGRHGYCR-YGCCYRGYHGCSRCCSYAGE 107


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 132 PLVHILININDAASATPVESVEPEQSNVEEKPAVSP 239
           PL  + +++N AA +TP  S  P        PA+SP
Sbjct: 406 PLTSVKVDLNQAAPSTPSPSPGPTAGFTFNLPALSP 441


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 717 NNYYDTCKSCKLYFHVNPHV 658
           NNYY  C +C L FH   H+
Sbjct: 51  NNYYYYCATCNLEFHRGCHI 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,650
Number of Sequences: 28952
Number of extensions: 202911
Number of successful extensions: 756
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)