Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0088
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    82   7e-17
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   6.2  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    25   8.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 81.8 bits (193), Expect = 7e-17
 Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
 Frame = +1

Query: 1   KIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHF 177
           KIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHF
Sbjct: 325 KIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHF 384

Query: 178 HYVLS 192
           HYVLS
Sbjct: 385 HYVLS 389



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 25/40 (62%), Positives = 30/40 (75%)
 Frame = +3

Query: 261 NSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 380
           N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 412 NETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -1

Query: 402 LYFMKYMSLDNLNIVEVFQLNLKNVVEKMLYLLQ*IL*KIEFLVYKNLMKACK*RISVNK 223
           LY+      D +N++      LK + +KML     +L    +   +N+ KA +  ++  K
Sbjct: 134 LYYDNSSYTDAINLINTLLSELKRMDDKMLLTEVHLLESKVYHAIRNIPKA-RASLTAAK 192

Query: 222 SPNNCKYC 199
           +  N  YC
Sbjct: 193 TSANAVYC 200


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 480 QRINLFSLNLHHQLNDIKIYHQQNIHIM 563
           + I +  LNLHH +ND + +  +   IM
Sbjct: 258 ENIRVLLLNLHHLINDYRPHQSRESLIM 285


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 103 LTGVILANSSIDITLHDTYYVV 168
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,683
Number of Sequences: 5004
Number of extensions: 28056
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)