Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0088
(591 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 96 2e-20
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +1
Query: 1 KIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFH 180
K+F LAT++G I + +L +GFVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFH
Sbjct: 23 KVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFH 82
Query: 181 YVLS 192
YVLS
Sbjct: 83 YVLS 86
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 276 KIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 380
KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 115 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 149
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 515 SIE*YQNLPPAEHSYNELPIL 577
S+E Q PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 276 KIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 380
KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 29 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 515 SIE*YQNLPPAEHSYNELPIL 577
S+E Q PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 330 HFLGLAGIPRRYSDYPD 380
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 515 SIE*YQNLPPAEHSYNELPIL 577
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 330 HFLGLAGIPRRYSDYPD 380
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 330 HFLGLAGIPRRYSDYPD 380
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 515 SIE*YQNLPPAEHSYNELPIL 577
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 330 HFLGLAGIPRRYSDYPD 380
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 515 SIE*YQNLPPAEHSYNELPIL 577
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 330 HFLGLAGIPRRYSDYPD 380
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 515 SIE*YQNLPPAEHSYNELPIL 577
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 330 HFLGLAGIPRRYSDYPD 380
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 515 SIE*YQNLPPAEHSYNELPIL 577
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 309 NITFFPQHFLGLAGIPRRY 365
+I F +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,749,353
Number of Sequences: 59808
Number of extensions: 168320
Number of successful extensions: 297
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -