Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0087
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    29   0.94 
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   2.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   5.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   6.6  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 198 KSVTRKIIICVITGGRTSCSPR 263
           K   +K+++C+I+ GRT   PR
Sbjct: 229 KDAWKKVVVCIISDGRTKIHPR 250


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 331 PHPSNRNALLLHGRNRQGDGTYP 263
           PHP N   +LL G N Q D + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 455 GGRAHSPPGIKWLLEPMDIYN 393
           GG  H P  + WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 339 NGCPTLQTETHYCFTAEIDRAMVPTRADYKRSYH 238
           NG  TL+  +H   T    +   P++AD K SYH
Sbjct: 416 NGNQTLEDTSHSPQTQPPFQPPYPSKADEKNSYH 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,252
Number of Sequences: 5004
Number of extensions: 60498
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)