Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0087
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         29   3.9  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   6.9  
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364...    28   9.1  
10_02_0110 - 5371536-5372882                                           28   9.1  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 350 SIVTTAAPPFKPKRITASRQK*TGRWYLPARTTRG----PTTSNYANYNFAGYTF 198
           S+ + AAPPF P RIT+      GR +  +   +     PT S    +  AG TF
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSVARKDVPFFPTLSRGWPWLHAGSTF 219


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 310 RFGLKGGAAVVTILRSLNLYLKVGGAFKL*MSMGSSNHLIPG 435
           + G+ G   V+   R   + L +GG  +  ++MG + HL  G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>11_08_0022 +
           27733247-27733935,27735722-27735981,27736213-27736404,
           27737695-27738686
          Length = 710

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 286 RQGDGTYPRGLQEVLPPVITQIIILRVTLL 197
           R+GDG    G Q ++PP +  I+++   +L
Sbjct: 358 RRGDGKIDNGCQPIIPPPVIGILVIAGVVL 387


>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 284 TGRWYLPARTTRGPTTSNYANYN 216
           TGRW   AR + GP  S+Y  +N
Sbjct: 248 TGRWSAEARRSSGPKMSSYTLHN 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,648,197
Number of Sequences: 37544
Number of extensions: 405230
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)