Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0087
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)                   29   3.0  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  

>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
          Length = 1115

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 60  DKTSGAFVLSDAPVFESQAGTNFSNELRTQQMFTIDFHGEGITSCN-KSVTRKIIICVIT 236
           D  SG   L +      + G N ++E     +   D  G+G  SCN +SV +  + C  +
Sbjct: 113 DDDSGKISLRNLRRVARELGENMTDEELRAMIDEFDKDGDGENSCNCRSVPKGTLHCRES 172

Query: 237 GGRTSCS 257
               SCS
Sbjct: 173 SSERSCS 179


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 322 SNRNALLLHGRNRQGDGTYPRGLQEVLPPVITQI 221
           S+ N+  L  +NR+G GTYP       P V+ ++
Sbjct: 724 SSDNSFSLEDKNREGPGTYPLRSGNAKPDVLAKL 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,787,402
Number of Sequences: 59808
Number of extensions: 465803
Number of successful extensions: 898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)