Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0087
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   3.5  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z54327-7|CAD57690.1|  268|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA he...    28   8.1  

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -3

Query: 485 HFFYFFIA*MGGRAHSPPGIKWLLEPMDIYNLNAP--PTLRYKF---KDLSIVTTAAPPF 321
           H F+F I  +     S PG+ +L   +D+Y L  P    +RY+F   KD + ++      
Sbjct: 28  HQFWFLIVPLALTVLSIPGLFYLQINLDLYRLFVPTDAPVRYEFERTKDFNSLSQGDLSL 87

Query: 320 KPKRITASRQK*TGRWYLP 264
            PKR         G  +LP
Sbjct: 88  TPKRNRREFDCEDGSCFLP 106


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 440 SPPGIKWLLEPMDIYNLNAPPTLRYKFKDLSIVTTAAPP 324
           +P   K  + P  +    APPT+R      ++ TT APP
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41


>Z54327-7|CAD57690.1|  268|Caenorhabditis elegans Hypothetical
           protein C26D10.2b protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 161 REHLLST*FIRKIGTRLGFEHRCIAQHECTGRLI 60
           R+ LL    +R IG   GFEH    QHEC  + I
Sbjct: 44  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 76


>Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical
           protein C26D10.2a protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 161 REHLLST*FIRKIGTRLGFEHRCIAQHECTGRLI 60
           R+ LL    +R IG   GFEH    QHEC  + I
Sbjct: 44  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 76


>U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA
           helicase protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 161 REHLLST*FIRKIGTRLGFEHRCIAQHECTGRLI 60
           R+ LL    +R IG   GFEH    QHEC  + I
Sbjct: 43  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,404
Number of Sequences: 27780
Number of extensions: 352675
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)