Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0087
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47970.1 68418.m05926 nitrogen regulation family protein stro...    30   1.4  
At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    28   5.8  
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa...    28   5.8  

>At5g47970.1 68418.m05926 nitrogen regulation family protein strong
           similarity to unknown protein (emb|CAB87804.1) ;
           contains Pfam domain PF01207: Dihydrouridine synthase
           (Dus); similar to (SP:P45672) NIFR3-like protein
           (SP:P45672) [Azospirillum brasilense]
          Length = 387

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 617 FKTVIKSITKDVWLCHIQLSGQVVVYRRHSIDAY 718
           ++T+ + ITK  WL    L+ + +VY+  ++D++
Sbjct: 25  YRTLARLITKHAWLYTEMLAAETIVYQEDNLDSF 58


>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 316 GLKGGAAVVTILRSLNLYLKVGGAFKL*MSMGSSNHLIPG 435
           G+     V+ + RS  + L +GG  +  ++MG S HL  G
Sbjct: 321 GILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAG 360


>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 398

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +3

Query: 81  VLSDAPVFESQAGTNFSNELRTQQMFTIDFHGEGITSCNKSVTRKIIICVITGGRTSC 254
           ++ D P  +       ++++   QMF++D  G     C++ V R I + ++ G   +C
Sbjct: 148 IIIDIPAQKETCNICLNDDINADQMFSVDKSGH--MCCSECVKRHIEVRLLEGSLITC 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,927
Number of Sequences: 28952
Number of extensions: 322284
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)