Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0086
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    59   4e-10
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    25   6.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 32/70 (45%), Positives = 38/70 (54%)
 Frame = +2

Query: 296 ENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXRLDNISF 475
           E G G G TVYPPLSS  +H G ++DLAI SL L GISS              R   +S 
Sbjct: 126 EEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSL 185

Query: 476 DQLPLFV*AV 505
            Q+PLF  A+
Sbjct: 186 YQMPLFAWAI 195



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +3

Query: 60  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 233
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 234 NNIRF 248
           NN  F
Sbjct: 105 NNFTF 109



 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 547 AGAITILLTDRNLNTSFLDPAGGGD 621
           AG + +L +DRNLNTSF  P GGGD
Sbjct: 210 AGGLFMLFSDRNLNTSFYAPEGGGD 234


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 581 FRSVNNIVIAPAKTGSDNNNKNAVTLQL 498
           FRSV+  +  PA  G  N  +NA  +QL
Sbjct: 10  FRSVSRSIRIPASNGCINLGRNAYRVQL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,939
Number of Sequences: 5004
Number of extensions: 25137
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)