Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0086
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)                      29   4.0  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           27   9.3  

>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
          Length = 414

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 265 GGG*SQNLILFIRGNAISGAPSI 197
           GGG S+NLI F  G  I G PS+
Sbjct: 98  GGGESKNLINFALGQDIGGVPSV 120


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 333  GG*TVHPVPAPFSTILLEINNIREGGRVKI 244
            GG  V P P  F  +LLE+  + E G V +
Sbjct: 1319 GGLFVAPNPIDFDVVLLELTRLDESGNVAV 1348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,766,649
Number of Sequences: 59808
Number of extensions: 181440
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)