Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0082
         (526 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.6  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.2  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    22   2.9  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    22   2.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   3.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   3.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   5.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 197 SQVQQDGGEHQRWRQNHPQSWYRRSQRL 114
           S V  D G   + +  H   W+RR  RL
Sbjct: 2   SGVVGDAGRASKGQDKHMVHWFRRGLRL 29


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 300 SLGVPGSPAVIRGHGGVL 247
           SL VPG+P ++  HG ++
Sbjct: 143 SLQVPGAPMMMSSHGPLM 160


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +3

Query: 429 PQPCWLQHQHPAHQPSSGNNNFAGTWAG 512
           P+ C L   +P H   S   N    W G
Sbjct: 92  PEDCELVLSNPTHMEKSAIYNLLHDWLG 119


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +3

Query: 429 PQPCWLQHQHPAHQPSSGNNNFAGTWAG 512
           P+ C L   +P H   S   N    W G
Sbjct: 92  PEDCELVLSNPTHMEKSAIYNLLHDWLG 119


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 402 LNNERRHHQPQPCWLQHQHPAHQ 470
           +NN    H  Q    QH  P HQ
Sbjct: 162 MNNHHMGHHMQEQHPQHHQPHHQ 184


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 402 LNNERRHHQPQPCWLQHQHPAHQ 470
           +NN    H  Q    QH  P HQ
Sbjct: 164 MNNHHMGHHMQEQHPQHHQPHHQ 186


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 421 IINHNHVGFNTNI 459
           ++ H+ V FNTNI
Sbjct: 126 LLEHSFVAFNTNI 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,740
Number of Sequences: 336
Number of extensions: 2175
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)