Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0082
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.98 
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   3.0  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 245  TNTPP*PRITAGEPGTPRLVSSPS 316
            T+TPP P+ ++G P  P  V +PS
Sbjct: 1047 TSTPPVPKSSSGAPSAPPPVPAPS 1070


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 131 GTRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTPP*PRITAGEPGTPRLVS 307
           G+R+     +NA  +  + G VI +  G T+ C A +   TP       G   TP +V+
Sbjct: 31  GSRMTARWNSNASGNEKVKGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVA 89


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 163 VGGRTTHNPGTVEVSGFLGASKTLSPGDTDL 71
           +G    H  G+V   GF G+    +P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 181 SCWTCDRTHEWQNFHLRSFLTDQHPSV 261
           SC++  +TH++++F ++S L    P V
Sbjct: 10  SCFSLQKTHQYRSFWIQSSLRALPPDV 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,392
Number of Sequences: 5004
Number of extensions: 30907
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)