Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0082
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760...    31   0.43 
10_02_0061 - 4812903-4812940,4813140-4813536                           28   5.3  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   5.3  
04_03_0811 - 19909128-19912214                                         27   7.0  
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821...    27   7.0  
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169...    27   9.2  
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916...    27   9.2  
02_05_0827 - 32051086-32051445                                         27   9.2  

>08_01_0786 -
           7606984-7607037,7607235-7607379,7608103-7608163,
           7608273-7608465
          Length = 150

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -2

Query: 234 APQMEVLPFVSAITSPARWG*APALAAEPPTILV 133
           AP    LPF S + + AR G APAL+A P   LV
Sbjct: 10  APARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43


>10_02_0061 - 4812903-4812940,4813140-4813536
          Length = 144

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 15  WRWRPWSW---QKRPSNLTTTTRSVSPGLRVLDAPRKP 119
           WRWR W W    +R ++ T    S++ G R+L   R P
Sbjct: 41  WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 179 GGEHQRWRQNHPQSW 135
           GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 254  GCWSVRKLRRWKFCHS*VRSQVQQDGGEHQRWRQ 153
            GCWS+R+L   +  HS   SQ  +  GE   WR+
Sbjct: 962  GCWSLRRLPLLRQEHS---SQAVEVSGERAWWRK 992


>03_04_0198 -
           18381668-18381830,18381903-18382060,18382164-18382199,
           18382344-18382439,18382632-18382709,18382921-18383073,
           18383261-18383365
          Length = 262

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 133 YQDCGWFCRQRWCSPPSCWTCDR 201
           Y++ GW+  Q W  PP     DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150


>11_01_0217 -
           1698721-1698875,1699122-1699421,1699840-1699918,
           1699998-1700062,1700187-1700239,1700654-1701072
          Length = 356

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 152 SAANAGAHPHLAGLVIALTNGRTSICGASLLTNTPP*PRITAGEPGTP 295
           +AA+ G   HL  +V + +    + C   L   T    R+ AGE G P
Sbjct: 24  TAADTGGFTHLLSVVSSASISFITDCRPGLSIPTEEVRRVVAGEEGAP 71


>08_02_0785 +
           21190002-21190253,21190452-21190523,21191498-21191631,
           21191700-21191850,21191938-21192087
          Length = 252

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 154 CRQRWCSPPSCWTCDRTHEWQNFHLRSFLTDQHPSVT 264
           C QRWC      TC+  HE    H  + L   HP  T
Sbjct: 90  CVQRWCDEKGDLTCEICHEPYK-HGYTALPRAHPDET 125


>02_05_0827 - 32051086-32051445
          Length = 119

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 131 GTRIVGGSAANAGAHPHLA---GLVIALTNGRTSICGASLLTNTPP*PRITAGEPGTPRL 301
           G  +V G+   AGA   +    GLV+A+T      C A+     PP PR++AG  G P  
Sbjct: 47  GMAMVAGTEPAAGAKVVVVVPCGLVVAMTR-----CPAAA-ARCPPDPRLSAGFGGWPAA 100

Query: 302 V 304
           V
Sbjct: 101 V 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,613
Number of Sequences: 37544
Number of extensions: 275516
Number of successful extensions: 966
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)