Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0081
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1432 + 37327775-37327940,37328025-37328362,37328843-37329109 32 0.31
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 1.6
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 1.6
05_05_0014 - 21523259-21523612,21523877-21524187,21524256-21524469 29 2.2
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 2.9
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 3.8
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 6.7
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 28 6.7
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 27 8.8
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886... 27 8.8
>01_06_1432 + 37327775-37327940,37328025-37328362,37328843-37329109
Length = 256
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 591 PKDTMPTSAFWKKAGAPKSVLS*SRPPAGPNRRRICYQSR 472
P T P S +WK AG P V S R P G + + Y+ R
Sbjct: 88 PSRTTP-SGYWKAAGTPGVVYSADRRPIGMKKTMVFYRGR 126
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 97 LKGSGSW*EQYQRTVGTIDSRWV 29
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 97 LKGSGSW*EQYQRTVGTIDSRWV 29
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>05_05_0014 - 21523259-21523612,21523877-21524187,21524256-21524469
Length = 292
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 591 PKDTMPTSAFWKKAGAPKSVLS*SRPPAGPNRRRICYQSR 472
P T P S +WK AG P V S P G + + Y+ R
Sbjct: 101 PSRTTP-SGYWKAAGTPGWVYSSDGRPIGTKKTMVFYRGR 139
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 436 SLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIPWGITTP 317
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 465 DRVVTDNKFCAGLVRLVAATTTILTWVPLPSSKM 566
+R + + + GLVR++AAT+T+ V LP+ ++
Sbjct: 845 EREIVETCYRKGLVRVLAATSTLAAGVNLPARRV 878
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 350 SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQG 448
SAR R I +PP R HC+++R+++G
Sbjct: 86 SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 407 VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 267
V++A ++ L + E I N L +D +LDN+TL+ ++ + M
Sbjct: 299 VDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 403 RLPSDTLPP*TVVPH-PSRSTKIPWGITTPCWIIAPCWMF 287
+LPS +LPP PH P ST + T+PC P F
Sbjct: 6 KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCF 45
>04_04_0666 +
27086568-27086975,27087073-27087477,27088542-27088635,
27088731-27088768,27088853-27088999,27089167-27089266,
27090001-27090953,27091512-27091569,27092904-27093022
Length = 773
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 319 PCWIIAPCWMFGPKWMACVTRTCSHP 242
P W P W GPKW +T HP
Sbjct: 590 PIWDSEPKWDNGPKWDTELTWESDHP 615
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,370,757
Number of Sequences: 37544
Number of extensions: 447630
Number of successful extensions: 1164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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