Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0081
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   0.64 
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    29   2.6  
AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p...    27   7.9  
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    27   7.9  

>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 269 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 400
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 251  ACTSNT-CHPLRPKHPAGCYYPTRCRNTPGY 340
            A   NT C P+  K P  C+   RC +TPGY
Sbjct: 1867 AAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 23  YSYPS*INGSNSALVLFSPTTTTFQLL 103
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 357 GWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAG 500
           GWG+T++G S+S   L ++ + + +   C        R+   +  CAG
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG 228


>AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.8 protein.
          Length = 740

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 251 ACTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 343
           AC +  CH    KHP  C +   CRN   YF
Sbjct: 679 ACRNPICHF---KHPKECRFGANCRNPSCYF 706


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 514  TSRTKPAQNLLSVTTRS*PLYCSLQFSLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIP 335
            T+ T P   L  +TT S   Y S Q S+  + S     LP+D+     + P PS +T++ 
Sbjct: 2705 TTMTSPDATLPILTTTSSEYYTSTQESIASSTSEVTIILPTDSTT--FLTPPPSTTTELI 2762

Query: 334  WGITT 320
            + +++
Sbjct: 2763 YTVSS 2767


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +1

Query: 43  QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPEF 222
           ++F+Q    VLT   + S A CF   F    YR  +    R   P  +  +  +V HP  
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365

Query: 223 SE 228
            E
Sbjct: 366 RE 367


>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = -2

Query: 544 TQVSIVVVAATSRTKPAQNLLSVTTRS*PLYCSLQFSLLVTMSSSLWRLPSDTLPP*TVV 365
           T  ++   ++T  + P  N+++ T  S           + T++++  + PS   P   V 
Sbjct: 608 TTATVAPTSSTVPSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSK-PSSRHPSEEVY 666

Query: 364 PHPSRSTKIPW 332
             PS+ T +PW
Sbjct: 667 RSPSQPTNVPW 677


>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = -2

Query: 544 TQVSIVVVAATSRTKPAQNLLSVTTRS*PLYCSLQFSLLVTMSSSLWRLPSDTLPP*TVV 365
           T  ++   ++T  + P  N+++ T  S           + T++++  + PS   P   V 
Sbjct: 608 TTATVAPTSSTVPSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSK-PSSRHPSEEVY 666

Query: 364 PHPSRSTKIPW 332
             PS+ T +PW
Sbjct: 667 RSPSQPTNVPW 677


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 62  LVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLLTIPNSLRRITT 241
           +V+F P  + F L+P+   N  I + +       V+VS   +L   LLL +    R  T 
Sbjct: 259 VVVFCPLLSLFYLVPMGYHNQAITNGIF------VSVSMHGFLSTVLLLLVHQPYRMATL 312

Query: 242 RM*AC 256
           R+  C
Sbjct: 313 RIFKC 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,543
Number of Sequences: 27780
Number of extensions: 362971
Number of successful extensions: 1013
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)