Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0081
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    30   1.0  
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative...    30   1.0  
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative...    30   1.0  
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative...    30   1.0  
At2g45940.1 68415.m05712 hypothetical protein contains Pfam prof...    30   1.4  
At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing...    29   2.4  
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    29   3.2  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    28   5.6  
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    28   5.6  
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    28   5.6  
At5g62890.1 68418.m07891 permease, putative similar to permease ...    27   7.4  
At4g33600.1 68417.m04773 expressed protein                             27   7.4  
At4g35850.1 68417.m05092 pentatricopeptide (PPR) repeat-containi...    27   9.7  
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    27   9.7  
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    27   9.7  

>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 597 LFPKDTMPTSAFWKKAGAPKSVLS---*SRPPAGPNRRRICYQSRRDHDPCTVPCSFLCW 427
           +F +DT P  A WK+ G  ++V +    +  P    RRRI  QS  +H       +  CW
Sbjct: 228 IFSEDTKPELALWKRWGLAQAVTTSAGLASYPLDTVRRRIMMQSGMEHP--MYRSTLDCW 285

Query: 426 SQ*VRACG 403
            +  R+ G
Sbjct: 286 KKIYRSEG 293


>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 97  LKGSGSW*EQYQRTVGTIDSRWV 29
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 97  LKGSGSW*EQYQRTVGTIDSRWV 29
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 97  LKGSGSW*EQYQRTVGTIDSRWV 29
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At2g45940.1 68415.m05712 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 399

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 170 VSPVKYLMFTLLLTIPNSLRRITTRM*ACTSNTCHP 277
           VS V  L+  LLLT+P   R  T RM + +S T +P
Sbjct: 10  VSLVFLLLMCLLLTLPQRCRHSTLRMFSSSSTTTNP 45


>At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing
           protein weak similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 707

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 325 TTPCWIIAPCWMFGPKWMACVTRTCSHPCRNSPQRIRDG*QQSEHKIF-HRAHCDGKIQR 149
           T P W++A  W+    W+A   R    P R  P+ I    + +  +IF   A  DG I++
Sbjct: 415 TLPGWVMAVAWLLYLVWLAISFR---EPAR-EPEEIHTSQESTSEQIFCGEADQDGNIEK 470


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 460 PLYCSLQFSLLVTMSSSLWRLPSDTL 383
           P Y  L FS+LVT  +SLW L  D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +1

Query: 34  ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 153
           +LN  F       L  + Y+ST TCF+G F     YD   RRI++
Sbjct: 2   MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46


>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 341 NTLGYYDTLLDNSTLLDVWAEVDGMCY 261
           +TLG+   ++ +  +LD+W  V+ +C+
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCF 88


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 341 NTLGYYDTLLDNSTLLDVWAEVDGMCY 261
           +TLG+   ++ +  +LD+W  V+ +C+
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCF 88


>At5g62890.1 68418.m07891 permease, putative similar to permease 1
           [Zea mays] GI:7844006; contains Pfam profile: PF00860
           Xanthine/uracil permeases family; identical to cDNA
           putative permease 1 (MQB2.21) GI:21326024
          Length = 476

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 539 SQYCRSRGHQPDQTGAEFVISHDAIMTLVLFP 444
           ++Y   +G+ P  TGA +V    +++ L+LFP
Sbjct: 443 NEYTAIKGYGPVHTGARWVCRTKSLLFLLLFP 474


>At4g33600.1 68417.m04773 expressed protein 
          Length = 453

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 36  LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 128
           L +MVP V W   HQ   P    L+ W  LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213


>At4g35850.1 68417.m05092 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 444

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 148 IAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSMYE*HMPSTSAQ 288
           I+G +R      +S  +FA +  E ++ NY  D+S Y   + S +AQ
Sbjct: 8   ISGRNRSLVRALVSRRYFASSPEEIAKRNYANDLSEYNTAVNSVTAQ 54


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
           similar to DNA helicase HEL308 [Homo sapiens]
           GI:19110782; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 465 DRVVTDNKFCAGLVRLVAATTTILTWVPLPSSKM 566
           +R + +  +  GLVR++ AT+T+   V LP+ ++
Sbjct: 307 EREIVETCYRKGLVRVLTATSTLAAGVNLPARRV 340


>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 474 RRDHDPCTVPCSFLCW 427
           RR+ DP ++P  ++CW
Sbjct: 47  RREEDPTSIPVEWICW 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,740
Number of Sequences: 28952
Number of extensions: 334076
Number of successful extensions: 842
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)