Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0080
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.0  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   5.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   7.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 150 SQVQQDGGEHQRWRQNHPQSWYRRSQRL 67
           S V  D G   + +  H   W+RR  RL
Sbjct: 2   SGVVGDAGRASKGQDKHMVHWFRRGLRL 29


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 258 SSPSLLAQLTSSPEAP--GSPPPMSR 329
           SSP L  +++ SP  P   SPPP  R
Sbjct: 83  SSPILAEKVSVSPTTPPTPSPPPEER 108


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 258  SSPSLLAQLTSSPEAPGSPPPMSR 329
            S PS    + ++ E PG PP   R
Sbjct: 980  SEPSETVTIITAEEVPGGPPTSIR 1003


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +3

Query: 132 HLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQAVSSPSLLAQLTSSPEAPGS 311
           HL+  V  L +    I G  ++ +    TA  C++ +      +P     L  + E+ GS
Sbjct: 214 HLSVFVYTLVSVILIIMGCDVVASNSRKTAEMCYKLQGFYPEEAPQRKELLRFASESRGS 273


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +3

Query: 447 LLVLGPGLPASEGPP--MLLREPQPTKTPSEPP 539
           L  +   L + E PP  +   EPQPT+T    P
Sbjct: 379 LNAINAALKSDEIPPEPVPTPEPQPTQTTESEP 411


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = -2

Query: 138 QDGGEHQRWRQNHPQSWYRRSQRLPRRV*D-----SRPGGYRSCCGSQL 7
           +D  +H +W++N   S  ++++   R V D      RPG +R+  GS+L
Sbjct: 222 EDEPDH-KWKKN--DSSKKKTRYYYRSVDDVIEKGKRPGAFRTTLGSEL 267


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 459 GPGLPASEGPPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
           G  L AS  P     E Q      E       R+R HV+  + S+P P
Sbjct: 143 GYHLGASSTPTNSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSVPQP 190


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 459 GPGLPASEGPPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
           G  L AS  P     E Q      E       R+R HV+  + S+P P
Sbjct: 143 GYHLGASSTPTNSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSVPQP 190


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 459 GPGLPASEGPPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
           G  L AS  P     E Q      E       R+R HV+  + S+P P
Sbjct: 143 GYHLGASSTPTNSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSVPQP 190


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 397 LHQQHPAHQPSQWKQQLCWYLG 462
           + +QHP H     +QQ   Y G
Sbjct: 171 MQEQHPQHHQPHHQQQHMMYGG 192



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 397 LHQQHPAHQPSQWKQQ 444
           +HQQ P HQ    +QQ
Sbjct: 198 MHQQGPPHQQPPIQQQ 213


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 397 LHQQHPAHQPSQWKQQLCWYLG 462
           + +QHP H     +QQ   Y G
Sbjct: 173 MQEQHPQHHQPHHQQQHMMYGG 194



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 397 LHQQHPAHQPSQWKQQ 444
           +HQQ P HQ    +QQ
Sbjct: 200 MHQQGPPHQQPPIQQQ 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,188
Number of Sequences: 336
Number of extensions: 3139
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)