Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0080
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    30   0.27 
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    28   1.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   2.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.5  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   10.0 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   10.0 
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   10.0 
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   10.0 

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 491  DAASGATTNKNAK*ASRSLPTPSAPARFGNNVIIASTSVLNGSNGRSTA 637
            +A   +T   + K ++ +L TPS    FGNN  + ++S  N S   STA
Sbjct: 874  NAPKPSTNTADGKDSASNLTTPSPAFSFGNNSGVKASSNNNPSTNSSTA 922


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 554 PSAPARFGNNVIIASTSVLNGSNGRSTAAETRRPLTS 664
           PS P+  G+N    +T  +NGSN   T+A+T   +T+
Sbjct: 137 PSVPSSLGSNHQFITTPPVNGSN-EPTSAQTNHIITA 172


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +2

Query: 395 GFTNNIQRINLASGSNNXXXXXXXXXXXXRTSDAASGATTNKNAK*ASRSLPTPSAPARF 574
           GF + I  +      +               +D  + +  NKN+    R LPT  +P+  
Sbjct: 27  GFFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPT--SPSHH 84

Query: 575 GNNVIIASTSVL 610
            N  I +S+S+L
Sbjct: 85  ANTEIDSSSSML 96


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 308 VTTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN 442
           VT SNV +   YN+    + +  +N++ V  + N   I+  S SN
Sbjct: 157 VTNSNVTIEHFYNVKGNVDSLFFLNNDSVAISGNFTEISPFSSSN 201


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 583 CDHCLHLCVERL*RSQHCSGDSAASH 660
           C  C+ L  E L +  H SGDS  SH
Sbjct: 458 CHQCVELVYEELMKICHYSGDSDISH 483


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 116 VGGRTTHNPGTVEVSGFLGASKTLGPGDTDL 24
           +G    H  G+V   GF G+     P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 456 LGPGLPASEGPPMLLREPQPTKTPSEPPGHYQRR 557
           L PG P    PP    EP     P  PPG+ ++R
Sbjct: 4   LPPGNPPPPPPPPGF-EPPSQPPPPPPPGYVKKR 36


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 143 SSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLGPGDTDL 24
           +SK+G+  +   R   +   + +  FL  S ++GPG T+L
Sbjct: 320 TSKIGLLKAYPNRVLMDKQGIHIGLFLEESPSIGPGMTNL 359


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 421  QPSQWKQQLCWYLGLGCR 474
            QP QW Q+LC    L CR
Sbjct: 1785 QPFQWFQELCVKAFLACR 1802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,957
Number of Sequences: 5004
Number of extensions: 42772
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)