Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0080
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 32 0.36
11_06_0610 - 25449085-25453284 31 0.64
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 31 1.1
08_02_0588 + 19036509-19039235 31 1.1
10_08_0810 + 20734490-20734606,20735182-20735433,20735521-207356... 30 1.5
09_04_0506 - 18188785-18190599 30 1.9
03_05_1164 - 30863063-30863095,30863308-30864777 30 1.9
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 29 3.4
03_02_0776 + 11103195-11103812 29 3.4
08_02_0276 + 15220151-15220465,15222587-15222730,15223179-15223367 28 5.9
08_01_0625 + 5444547-5444912 28 5.9
07_03_0951 - 22836167-22836358,22836455-22837213 28 5.9
06_03_1299 - 29149623-29149787,29149984-29150073,29150279-291503... 28 5.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 5.9
03_02_0172 - 6131559-6131990 28 5.9
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 7.8
12_01_0877 - 8415186-8415272,8415696-8416310 28 7.8
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 7.8
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 28 7.8
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -1
Query: 211 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 86
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 471 PASEGPPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
P S PP EP PT TP P ++ + P + S PPP
Sbjct: 903 PESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPAK---STPPP 943
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 471 PASEGPPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
P S PP EP P+ TP P ++ + P + S PPP
Sbjct: 953 PESSSPPSEESEPPPSPTPKSSPPSHEEYVPPSPAK---STPPP 993
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 108 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQAVSSPSLL 275
A N GA A V+ + +GR S+ +L + + AA WR+RR Q + P L
Sbjct: 49 AVNGGA----AEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQREARPDAL 100
>08_02_0588 + 19036509-19039235
Length = 908
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 147 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQAVSSPSLL 275
V+ + +GR S+ +L + + AA WR+RR Q + P L
Sbjct: 185 VVVIVSGRRSVGEPTLDVSEMLLQAAQAWRSRRTQREARPDAL 227
>10_08_0810 +
20734490-20734606,20735182-20735433,20735521-20735664,
20735774-20736493,20736955-20737177,20737463-20737523,
20738294-20738615
Length = 612
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 237 TRRAQAVSSPSLLAQLTSSPEAPGSPPPMSR 329
TRR AV SP LL Q + E +P PM R
Sbjct: 555 TRRQCAVGSPELLQQQARATEVAAAPMPMRR 585
>09_04_0506 - 18188785-18190599
Length = 604
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 486 PPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
PP + ++P P + P PP Q++ + L+ SLPPP
Sbjct: 64 PPPISQQPPPLQAPPPPP---QQQQQQQQLQAPPSLPPP 99
>03_05_1164 - 30863063-30863095,30863308-30864777
Length = 500
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 447 LLVLGPGLPASEGPPMLLREPQPTKTPSEPPGHYQRRLRP 566
+L L P P+SE PP+LLR+ T PS P H + + P
Sbjct: 206 VLCLWPPPPSSEKPPLLLRD---TPGPSIEPWHLKEPVFP 242
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 474 ASEGPPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
A+ PP P+P + P PP QR LRP E+ PPP
Sbjct: 209 AAPAPPQT-NPPRPVRPPPPPPPPRQRLLRPLPAES----PPP 246
>03_02_0776 + 11103195-11103812
Length = 205
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +3
Query: 231 WRTRRAQAVSSPSLLAQL----TSSPEAPGSPPPMSR 329
WRTRRA + S LL + + SP + + PP SR
Sbjct: 39 WRTRRAHEIYSSKLLDAIRLVRSGSPSSSAAAPPRSR 75
>08_02_0276 + 15220151-15220465,15222587-15222730,15223179-15223367
Length = 215
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 533 ASRSLPTPSAPARFGNNVIIASTSVLNGSNGRSTAAETRRPLTSAAA 673
AS + T A +R GNN+++ + +NG+NG + + +AAA
Sbjct: 46 ASAASSTAGAGSR-GNNLVLFKWTPMNGANGNGGGGDGDQAAAAAAA 91
>08_01_0625 + 5444547-5444912
Length = 121
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 673 RRCRCERPPSLRCSAATVRAVQHRGGGND 587
RR R P RC ++TV A RGGG D
Sbjct: 60 RRSRVLLLPPRRCFSSTVAAGYRRGGGED 88
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 507 PQPTKTPSEPPGHYQRRLR 563
P PT TPS+P Y RR R
Sbjct: 64 PPPTPTPSQPSSSYHRRRR 82
>06_03_1299 -
29149623-29149787,29149984-29150073,29150279-29150371,
29150844-29150916,29151198-29151355
Length = 192
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 161 EWQNFHLRSFLTDQHPLRDRRSLLEDQESPGCQFTLALGTANIFSGGTRVTTSNVQM 331
EW+ H++ FL H D LE ES T I GT TT+ V++
Sbjct: 139 EWKRLHMKDFLAMTHGFMDG---LEQPESKSRVETYQSFMQEIQQPGTTTTTTQVEI 192
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 180 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 88
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>03_02_0172 - 6131559-6131990
Length = 143
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +3
Query: 234 RTRRAQAVSSP----SLLAQLTSSPEAPGSP 314
R RRA AVS P S L Q +S E PGSP
Sbjct: 26 RGRRADAVSRPPRSSSFLCQSSSPSEPPGSP 56
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 180 CGASLLTNTRSVTAAHC 230
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 462 PGLPASEGP-PMLLREPQPTKTPSEP 536
P LP E P P++ EP P TP +P
Sbjct: 176 PPLPPPEEPTPLVRNEPSPAPTPEKP 201
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 258 SSPSLLAQLTSSPEAPGSPPP 320
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = -3
Query: 551 LVMTWRLTWRFCWLWLPKQHRRSFRSRQPRPKYQQSCCFHWLG*CAGC 408
LV +W L + ++ + R+ P CC HW CA C
Sbjct: 141 LVFSWWLCGTYTGIFRQELQRKYHLKNSPCDPCMVHCCLHW---CANC 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,415,275
Number of Sequences: 37544
Number of extensions: 403362
Number of successful extensions: 2218
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2203
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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