Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0080
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 39 0.004
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 38 0.005
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 38 0.009
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 32 0.43
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 29 2.3
AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein. 29 3.0
AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein. 29 3.0
AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical ... 29 3.0
AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical ... 29 3.0
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 3.0
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr... 29 4.0
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 4.0
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 4.0
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 4.0
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 9.2
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 27 9.2
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +3
Query: 90 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 230
RI+GG++ + GA+ +A LV NG+ +CGA+++ + VTAAHC
Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC 82
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = +3
Query: 90 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW 233
R+VGG GA P A L T CGAS+L T +TAAHC+
Sbjct: 26 RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCF 71
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 87 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 230
T I+ G +AN+ LA ++ +G T++CG L+ + +T+AHC
Sbjct: 15 TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 31.9 bits (69), Expect = 0.43
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 90 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRRAQAVS 260
R++GGS ++ + P L+ L + R CG SL+ +TAAHC+ + RR + S
Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCFAKDRRPTSYS 111
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 465 GLPASEGPPMLLREPQPTKTPSEPPGHYQRRLRP 566
G P PP + R P P+ +PPG Q ++RP
Sbjct: 137 GTPNMMSPPSMGRVPGPSPGGPQPPGPGQPQMRP 170
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 465 GLPASEGPPMLLREPQPTKTPSEPPGHYQRRLRP 566
G P PP + R P P+ +PPG Q ++RP
Sbjct: 137 GTPNMMSPPSMGRVPGPSPGGPQPPGPGQPQMRP 170
>AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein.
Length = 510
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 189 SLLTNTRSVTAAHCWRTRRAQAVSSPSLLAQLTSSPEAPGSPPP 320
S T + SVT+++ A SS S+L +S P P S PP
Sbjct: 38 SKTTTSSSVTSSNPINAPPPTATSSSSVLPSTSSEPPPPASAPP 81
>AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein.
Length = 550
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 189 SLLTNTRSVTAAHCWRTRRAQAVSSPSLLAQLTSSPEAPGSPPP 320
S T + SVT+++ A SS S+L +S P P S PP
Sbjct: 42 SKTTTSSSVTSSNPINAPPPTATSSSSVLPSTSSEPPPPASAPP 85
>AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical
protein F58D5.4b protein.
Length = 510
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 189 SLLTNTRSVTAAHCWRTRRAQAVSSPSLLAQLTSSPEAPGSPPP 320
S T + SVT+++ A SS S+L +S P P S PP
Sbjct: 38 SKTTTSSSVTSSNPINAPPPTATSSSSVLPSTSSEPPPPASAPP 81
>AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical
protein F58D5.4a protein.
Length = 550
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 189 SLLTNTRSVTAAHCWRTRRAQAVSSPSLLAQLTSSPEAPGSPPP 320
S T + SVT+++ A SS S+L +S P P S PP
Sbjct: 42 SKTTTSSSVTSSNPINAPPPTATSSSSVLPSTSSEPPPPASAPP 85
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 105 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 236
+A N G HLA + + R ICG +L+T +TAAHC++
Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 162 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 31
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 162 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 31
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
protein C10C6.6 protein.
Length = 1178
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 183 GASLLTNTRSVT-AAHCWRTRRAQAVSSPSLL---AQLTSSPEAPGSPP 317
G +LLTN AA + ++A+ + SL+ AQL P APG+PP
Sbjct: 836 GVALLTNPYDAEKAAEKEKEKKAKIEEARSLVRSGAQLPQRPGAPGAPP 884
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 359 HNDVAIINHNHVGFTNNIQRINLASGSNN 445
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 359 HNDVAIINHNHVGFTNNIQRINLASGSNN 445
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 359 HNDVAIINHNHVGFTNNIQRINLASGSNN 445
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 462 PGLPASEGPPMLLREPQPTKTPSEPPG 542
P S PP ++ PQP + P PPG
Sbjct: 693 PAPSTSVPPPTSVQPPQPQQPPQGPPG 719
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 329 MHGSYNMDTLHNDVAIINHNHVGFTNNIQRIN 424
+H S N TL N I+N F ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,499,260
Number of Sequences: 27780
Number of extensions: 290156
Number of successful extensions: 1330
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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