Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0080
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 33 0.23
At2g15760.1 68415.m01804 calmodulin-binding protein similar to A... 31 0.93
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei... 30 1.6
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 29 2.1
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 29 3.8
At2g26860.2 68415.m03223 F-box family protein contains F-box dom... 29 3.8
At2g26860.1 68415.m03222 F-box family protein contains F-box dom... 29 3.8
At2g15020.1 68415.m01710 expressed protein and genefinder 28 5.0
At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containi... 28 5.0
At2g31690.1 68415.m03868 lipase class 3 family protein similar t... 28 6.6
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 27 8.7
At4g39680.1 68417.m05614 SAP domain-containing protein contains ... 27 8.7
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla... 27 8.7
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 27 8.7
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 486 PPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
PP+ + E QP +P+ PP H+ R P ++ M PPP
Sbjct: 32 PPVEVEENQPKTSPTPPPPHWM-RYPPVLMPQMMYAPPP 69
>At2g15760.1 68415.m01804 calmodulin-binding protein similar to
AR781 GI:1669593 from [Arabidopsis thaliana]; AR781
complements pheromone receptor deficient mutant of
Shizosaccharomyces pombe
Length = 315
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 497 ASGATTNKNAK*ASRSLPTPSAPARFGNNVIIASTS 604
A+ A N ++ +S + PS+P RFGNN A TS
Sbjct: 8 AAAAELNFDSTTSSPYITAPSSPTRFGNNFFSAPTS 43
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 210
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 462 PGLPASEGPPMLLREPQPTKTPSEPPGHYQ 551
P P + PP + +PQP TPS P YQ
Sbjct: 33 PQRPITPSPPPYVAKPQPLPTPSPKPILYQ 62
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 149 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 48
HK+ MG STS+ G T+H+P V G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 527 WRFCWLWLPK 498
WRF W+WLPK
Sbjct: 34 WRFLWMWLPK 43
>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
Pfam:PF00646
Length = 355
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 584 HCFQNVRAQTALVMTWRLTWRFCWLWLPK 498
HC + +++ R W F WLW+PK
Sbjct: 17 HCLPTKEVVSTSILSKR--WEFLWLWVPK 43
>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
Pfam:PF00646
Length = 405
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 584 HCFQNVRAQTALVMTWRLTWRFCWLWLPK 498
HC + +++ R W F WLW+PK
Sbjct: 17 HCLPTKEVVSTSILSKR--WEFLWLWVPK 43
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/61 (31%), Positives = 23/61 (37%)
Frame = +2
Query: 122 CSPPSCWTCDRTDEWQNFHLRSFLTDQHPLRDRRSLLEDQESPGCQFTLALGTANIFSGG 301
C P +D F L LT LR R+L DQES FT+ N+
Sbjct: 8 CELPEDPEFSESDSHAVFQLAGDLTRSIKLRAERTLGSDQESHSLTFTVVAEGFNLLKSS 67
Query: 302 T 304
T
Sbjct: 68 T 68
>At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 761
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 239 QESPGCQFTLALGTANIFSGGTRVTTSNVQM 331
+++PGC + + G AN+F G + + QM
Sbjct: 707 KKTPGCSWVVVNGRANVFLSGDKSASEAAQM 737
>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 484
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 234 RTRRAQAVSSPSLLAQ-LTSSPEAPGSPPPM 323
R + A + SS SLLA + +SP A SPPP+
Sbjct: 41 RLKTANSSSSSSLLAPVILNSPVASSSPPPI 71
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 86 YQDCGWFCRQRWCSPPSCWTCDR 154
Y++ GW+ Q W PP DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207
>At4g39680.1 68417.m05614 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 633
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +3
Query: 462 PGLPASEGPPMLLREPQPTKTPSEPPGHYQRRLRPHVLETM*SLPPP 602
P P + L P PT P PP PHV+E + LPPP
Sbjct: 544 PPQPQHQPQAQTLSRPPPTALPPPPP----LAKPPHVVERL-PLPPP 585
>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR class),
putative domain signature NBS-LRR exists, suggestive of a
disease resistance protein.
Length = 1424
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 195 LTNTRSVTAAHCWRTRRAQAVSSPSLLAQLTSSPEAPGSPPPMSR 329
L ++ VT + C RA + S LT+ PE+P S P MSR
Sbjct: 888 LPSSTEVTISDC--PLRAVSGGENSFRRSLTNIPESPASIPSMSR 930
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/84 (23%), Positives = 41/84 (48%)
Frame = +2
Query: 395 GFTNNIQRINLASGSNNXXXXXXXXXXXXRTSDAASGATTNKNAK*ASRSLPTPSAPARF 574
G+ ++ + N A G + + SG TT++ + + +++ T S+PAR
Sbjct: 392 GYKESLSKKNEAHGFGSERDAESVHNSIQEPTTLVSGTTTSRVTE-SGKAIRT-SSPARQ 449
Query: 575 GNNVIIASTSVLNGSNGRSTAAET 646
NN +S+S + S+ S +++T
Sbjct: 450 ENNASGSSSSNSSSSDSGSCSSDT 473
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,383
Number of Sequences: 28952
Number of extensions: 269797
Number of successful extensions: 1294
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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