Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0079
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    27   2.1  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   6.5  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   8.6  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   8.6  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 121 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 252
           F+K+ KL  +K  I+G ++GA  A VT      KV ++  +D S
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS 121


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 383 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 282
           +E ++S ++  ++FV   S  VN F+V S+  S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 485 RKSVQHRSEITANNCRGFLVEMGTAKLVKHGSGMFRVNTGMRYP 616
           RK ++   E+T  NC  +  E    K VKH      V    RYP
Sbjct: 13  RKKLRCNGELTCQNCMVYGEECRYVKRVKH-DNRAAVQENERYP 55


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 624 KWNGYLMPVFTRNIPDPCFTSL 559
           K +GY+ P+F   +P  CF SL
Sbjct: 374 KKSGYMQPLFDLTMPLGCFDSL 395


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 401 DKTAVDKEVNVSNSNAQAV--FVDTRSVGVNNFN 306
           DK    K+  V NSN +++  F    ++G+N+FN
Sbjct: 72  DKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFN 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,938
Number of Sequences: 5004
Number of extensions: 57201
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)