Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0079
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated...    29   3.5  
U14525-1|AAA50786.1|  434|Caenorhabditis elegans avermectin-sens...    29   3.5  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 2 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +1

Query: 31  VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 195
           +++V W SF +  +STA     GV + +  T ++   N KL P++ V +V   LGA    
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318

Query: 196 VTGRNLE 216
           V G  LE
Sbjct: 319 VFGALLE 325


>U14525-1|AAA50786.1|  434|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl beta protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +1

Query: 31  VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 195
           +++V W SF +  +STA     GV + +  T ++   N KL P++ V +V   LGA    
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318

Query: 196 VTGRNLE 216
           V G  LE
Sbjct: 319 VFGALLE 325


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 85  MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAG 195
           + +T   S + TF   LK+P   VHI+G + G    G
Sbjct: 10  LPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVG 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,084
Number of Sequences: 27780
Number of extensions: 333998
Number of successful extensions: 865
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)