Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0079
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 DWENNVLRLGTNDAQYVEVIH 320
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 10  LRSGNYNVIVVDWSSF 57
           +++G+Y V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 10  LRSGNYNVIVVDWSSF 57
           +++G+Y V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 650 FVLSFVGITNGMGTSCRY 597
           F+LS VG+  G+G   R+
Sbjct: 28  FILSVVGLAIGLGNLWRF 45


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 650 FVLSFVGITNGMGTSCRY 597
           F+LS VG+  G+G   R+
Sbjct: 81  FILSVVGLAIGLGNLWRF 98


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +3

Query: 210 FGRQSSKNYGSRPFGRDWENNVLRLGTNDAQYVEVIHTDGSGVNKNGL 353
           F R   +    RP  ++ + ++LR+  N  QY  +      G++++ +
Sbjct: 91  FRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAV 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,623
Number of Sequences: 438
Number of extensions: 4354
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)