Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0078
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   3.0  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    24   6.8  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   9.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    23   9.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    23   9.0  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 105 RPPSWSPLGRVAAATKWICRTVSC 176
           R PSWSP G+  AA   +   VSC
Sbjct: 228 RRPSWSPDGKHIAAPNAMNGPVSC 251


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 105 DGCRPTRNAMGLYPIW 58
           DGCR   +++  YP+W
Sbjct: 168 DGCRQRLDSLLYYPVW 183


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 175 VPIYLVLSNCKFCFNLSI 228
           +PI++ ++  ++CFNLS+
Sbjct: 52  MPIFMDIAFIEYCFNLSL 69


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 114 SWSPLGRVAAAT 149
           SW PLGRVA  T
Sbjct: 82  SWYPLGRVAGGT 93


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 27  SSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPLGRVAAATK 152
           SS TKP     RS ++  RFA   ++ P S S     AA++K
Sbjct: 589 SSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSK 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,521
Number of Sequences: 5004
Number of extensions: 26012
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)