Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0078
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0013 - 355103-355435 31 0.29
04_03_0119 + 11485753-11486202 30 0.38
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 29 0.89
01_05_0746 + 24856362-24856710,24856799-24856986 29 0.89
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 28 1.5
11_06_0602 + 25411159-25411276,25412281-25412384 27 3.6
10_05_0021 + 8118819-8119118 27 4.7
06_01_0740 - 5473895-5474061,5474153-5474399,5475207-5475336,547... 27 4.7
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 27 4.7
02_01_0341 + 2444419-2445495 27 4.7
10_01_0073 - 955746-955758,955811-956832 26 6.2
10_01_0072 - 918323-918335,918388-919409 26 6.2
09_02_0549 + 10485415-10486107 26 6.2
08_01_0445 + 3942820-3943030,3943719-3943853,3943942-3944150,394... 26 6.2
07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725 26 6.2
05_07_0361 + 29555446-29556138 26 6.2
05_03_0579 - 15714195-15714887 26 6.2
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 26 6.2
03_05_1059 - 30020877-30021539,30022367-30022375 26 6.2
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 26 6.2
02_05_0486 - 29423756-29423965,29425424-29425528 26 6.2
02_03_0050 + 14433013-14433303 26 6.2
12_01_0849 + 7948693-7948996,7949829-7950610 26 8.3
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 26 8.3
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 26 8.3
08_02_0366 - 16301133-16302592,16302702-16302750 26 8.3
02_01_0609 + 4558839-4559202,4559283-4559965 26 8.3
02_01_0345 + 2484073-2485152 26 8.3
>09_01_0013 - 355103-355435
Length = 110
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = -3
Query: 131 PQRRPRWRP---TDADPRETQWDCIRSGT 54
PQRRPRWRP R W R GT
Sbjct: 45 PQRRPRWRPQRRLGQQRRRATWHSFRQGT 73
>04_03_0119 + 11485753-11486202
Length = 149
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 6 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPL 128
G ++ WCSS P P A S L C RR SPL
Sbjct: 69 GGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 29.1 bits (62), Expect = 0.89
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3
Query: 6 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPLGRVAAATKWICR-TVSCTY 182
G V S G VP+ S+ PLRF VC G +AA W+ V+ T+
Sbjct: 459 GAYIVSYSPGMGTVPWIVNSEIYPLRFRGVC----------GGIAAVANWVSNLIVTQTF 508
Query: 183 LFSFK*L*ILFQFVYYCII 239
L K L F +C +
Sbjct: 509 LSLTKALGTSATFFLFCAV 527
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 57 ARSDTVPLRFAWVCIRRPPSW 119
ARSDT P A VC+RR P+W
Sbjct: 84 ARSDTWPC-LAGVCVRRKPAW 103
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 58 PDRIQSHCVSRGSASVGRH--LGRRWGVLLQLQNGFVER 168
PDR C + GS VGR L R VL L+ FVE+
Sbjct: 196 PDRCPCSCNAEGSTKVGRSTCLLHRGVVLTSLERHFVEK 234
>11_06_0602 + 25411159-25411276,25412281-25412384
Length = 73
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 97 ASVGRHLG--RRWGVLLQLQNGFVERYHVPIYLV 192
A++GR G RR + Q ++GFV+++ +P ++V
Sbjct: 33 AALGRRRGGGRRSNITAQREDGFVQKFSLPRWIV 66
>10_05_0021 + 8118819-8119118
Length = 99
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 128 QRRPRWRPTDADPRETQW 75
QRRP W P D DP W
Sbjct: 43 QRRPWWAPPDLDPLGQIW 60
>06_01_0740 -
5473895-5474061,5474153-5474399,5475207-5475336,
5475874-5475951,5476192-5476337,5476661-5476906,
5477498-5477746,5478356-5478493,5479015-5479113,
5479456-5479641,5480477-5480896
Length = 701
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 225 YYCIILNWNFAL 260
Y CI+ NWNFA+
Sbjct: 204 YKCIVFNWNFAI 215
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -3
Query: 146 SCSNTPQRRPRWRPTDADPRETQWDCIRSG 57
+C P +W P DA R + DC G
Sbjct: 183 TCGPPPAEGGQWAPADAAARRLEKDCAEPG 212
>02_01_0341 + 2444419-2445495
Length = 358
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 21 WCSSGTKPVPFCARSDTVPLRFAW 92
W +G +PFC R++ VP W
Sbjct: 216 WSKAGDWALPFCGRAEYVPEHGLW 239
>10_01_0073 - 955746-955758,955811-956832
Length = 344
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 167 RSTNPFCSCSNTPQRRPRW 111
R P CSC+ PQ+ RW
Sbjct: 247 RIPTPICSCTGAPQQCYRW 265
>10_01_0072 - 918323-918335,918388-919409
Length = 344
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 167 RSTNPFCSCSNTPQRRPRW 111
R P CSC+ PQ+ RW
Sbjct: 247 RIPTPICSCTGAPQQCYRW 265
>09_02_0549 + 10485415-10486107
Length = 230
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 146 SCSNTPQRRPRWRPTDADP 90
S SN P+ P WRP D P
Sbjct: 172 SSSNAPRIAPIWRPIDKSP 190
>08_01_0445 +
3942820-3943030,3943719-3943853,3943942-3944150,
3944258-3944464
Length = 253
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 91 GSASVGRHLGRRWGVLLQLQNGFVERYHVPI 183
GS S+GR+ G RW V Q + E + + +
Sbjct: 23 GSGSLGRYSGLRWPVAAQARRAAEEGFRLRV 53
>07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725
Length = 523
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -1
Query: 157 IHFVAAATRPSGDQ--DGGRRMQTHAKRNGTVSDLAQNGTGLVPELHHTNTSP 5
I AAA+ P+ + GGR+ T+ L GT LVPE+ P
Sbjct: 38 IRAAAAASSPASPRGHSGGRKPARPPSLQSTLWPLGHPGTLLVPEIERWAAKP 90
>05_07_0361 + 29555446-29556138
Length = 230
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 146 SCSNTPQRRPRWRPTDADP 90
S SN P+ P WRP D P
Sbjct: 172 SSSNAPRIAPIWRPIDKSP 190
>05_03_0579 - 15714195-15714887
Length = 230
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 146 SCSNTPQRRPRWRPTDADP 90
S SN P+ P WRP D P
Sbjct: 172 SSSNAPRIAPIWRPIDKSP 190
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 160 QIHFVAAATRPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGL 38
Q H +AAA RP+ Q G RM + GTV + Q L
Sbjct: 711 QPHHLAAAGRPARGQVHGFRMALWYEHLGTVDEAFQRPESL 751
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +3
Query: 156 ICRTVSCTYLFSFK*L*ILFQFVYYCIILNWNFALFILNKNCNIC 290
IC + LF F+ + L +Y C I + F L + ++C
Sbjct: 131 ICHCILFRSLFCFRLIIWLMFIIYICYICSHGFTLTFIPDTTDVC 175
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 82 VSRGSASVGRHLGRR 126
VS G AS+GRHL RR
Sbjct: 9 VSAGEASLGRHLARR 23
>02_05_0486 - 29423756-29423965,29425424-29425528
Length = 104
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 84 FAWVCIRRP-PSWSPLGR 134
FAW+C+R P P SPL R
Sbjct: 83 FAWLCLRLPLPGCSPLER 100
>02_03_0050 + 14433013-14433303
Length = 96
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 115 LGRRWGVLLQLQNGFVERYHVPIYLVLSNCKF 210
LGRR Q Q G V R H P+Y+ S C++
Sbjct: 21 LGRR-----QQQQGAVPRGHFPVYVGESRCRY 47
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Frame = -3
Query: 131 PQRRPR----WRPTDADPRETQW 75
P RRP WRP + PR QW
Sbjct: 152 PLRRPALCCPWRPLEVHPRRQQW 174
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 149 CSCSNTPQRRPRW 111
CSC+ PQ+R RW
Sbjct: 255 CSCTGAPQQRYRW 267
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = +3
Query: 18 VWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPLGRVAAATKW 155
+W S T CA + W+ R PP PLG A W
Sbjct: 90 LWWSFSTYLTEGCAFDSSAVFASRWITSRPPP--MPLGEYCAGGLW 133
>08_02_0366 - 16301133-16302592,16302702-16302750
Length = 502
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 49 HFVPDRIQSHCVSRGSASVGR 111
HF P + S VSRG SVGR
Sbjct: 288 HFTPTVLASGKVSRGGRSVGR 308
>02_01_0609 + 4558839-4559202,4559283-4559965
Length = 348
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 169 TVLQIHFVAAATRPSGDQDGGRRMQTHAKRNGTVSDLAQNGTG 41
T ++ FV+ G +DGGR+ + A+++ S A +G
Sbjct: 80 TCARLRFVSFRGGRGGRRDGGRKEELAAEKSEAASSSADEASG 122
>02_01_0345 + 2484073-2485152
Length = 359
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 21 WCSSGTKPVPFCARSDTVPLRFAWV 95
W G +PFC R++ VP W+
Sbjct: 214 WSKVGDWALPFCGRAEFVPEHGLWL 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,616
Number of Sequences: 37544
Number of extensions: 183968
Number of successful extensions: 680
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -