Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0078
(331 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031) 27 2.8
SB_51945| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_7578| Best HMM Match : CTP_transf_2 (HMM E-Value=6.3) 26 6.5
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 26 8.5
SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_42489| Best HMM Match : ig (HMM E-Value=6.9e-06) 26 8.5
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7) 26 8.5
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28) 26 8.5
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 26 8.5
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 26 8.5
>SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)
Length = 969
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 133 VLLQLQNGFVERYHVPIYLVLSNCKFCFNL 222
+LL +Q+GF ++Y L+ K C+NL
Sbjct: 763 ILLHIQHGFRKKYSCETQLITVLHKLCYNL 792
>SB_51945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 231 CIILNWNFALFILNK 275
C NWN ALFILNK
Sbjct: 49 CTPKNWNTALFILNK 63
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 133 VLLQLQNGFVERYHVPIYLVLSNCK 207
+L +L+NG + YH+ +Y + N K
Sbjct: 2185 ILPELENGIITGYHINVYELSGNLK 2209
>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1720
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 155 PFCSCSNTPQRRPRWRPTDADPRETQWDCIRSGTKWHW 42
P S N Q R +RP+D RET+ + S K W
Sbjct: 956 PEVSEDNLKQPRSIFRPSDRHRRETRGSWMESNVKDRW 993
>SB_7578| Best HMM Match : CTP_transf_2 (HMM E-Value=6.3)
Length = 436
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 109 RHLGRRWGVLLQLQNGFVERYHVPIYLVLSNCKF 210
R L R+G+L++L+ ER H P + +L C +
Sbjct: 68 RQLAPRFGLLVKLRGVKQERQHAPRFGLLVVCNY 101
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -2
Query: 177 YMIPFYKSIL*LQ----QHAPAATKMAADGCRPTRNAMGLYPIWHKMALV*FRSYT 22
+ +PF+ L ++ QH +M GC TRNA+G+ H + SYT
Sbjct: 1319 FSLPFFAKTLRIRPVHWQHH-ICIRMELKGCSVTRNAIGMESFEHPNNKITASSYT 1373
>SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 133 VLLQLQNGFVERYHVPIYLVLSNCKFCFNL 222
+LL +Q+GF ++Y L+ + C+NL
Sbjct: 134 ILLHIQHGFRKKYSCETQLITVLHELCYNL 163
>SB_42489| Best HMM Match : ig (HMM E-Value=6.9e-06)
Length = 369
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 161 TNPFCSCSNTPQRRPRW--RPTDADPRETQWDCIRSGTKWH 45
+N SC T +R +W PT+ DP + Q I+ K+H
Sbjct: 132 SNVRISCETTANQRIKWFYYPTNEDPSQKQ--MIQHSNKYH 170
>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -3
Query: 143 CSNTPQRRPRWRPTDA--DPRETQWDCIRSGTKW 48
C RPR +PT R+T+ CIRS +W
Sbjct: 335 CFLVENNRPRIKPTKTVVTKRDTRASCIRSFGQW 368
>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
Length = 359
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -3
Query: 143 CSNTPQRRPRWRPTDA--DPRETQWDCIRSGTKW 48
C RPR +PT R+T+ CIRS +W
Sbjct: 100 CFLVENNRPRIKPTKTVVTKRDTRASCIRSFGQW 133
>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 133 VLLQLQNGFVERYHVPIYLVLSNCKFCFNL 222
+LL +Q+GF ++Y L+ + C+NL
Sbjct: 988 ILLHIQHGFRKKYSCETQLITVLHELCYNL 1017
>SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)
Length = 591
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 133 VLLQLQNGFVERYHVPIYLVLSNCKFCFNL 222
+LL +Q+GF ++Y L+ + C+NL
Sbjct: 108 ILLHIQHGFRKKYSCETQLITVLHELCYNL 137
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -3
Query: 143 CSNTPQRRPRWRPTDA--DPRETQWDCIRSGTKW 48
C RPR +PT R+T+ CIRS +W
Sbjct: 335 CFLVENNRPRIKPTKTVVTKRDTRASCIRSFGQW 368
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 77 WDCIRSGTKWHWFSSGATPHKHVT 6
W +S T W+W S PH+ +T
Sbjct: 128 WTNWKSNTSWNWNSVDNGPHRDLT 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,500,184
Number of Sequences: 59808
Number of extensions: 210887
Number of successful extensions: 529
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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