Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0078
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   1.0  
Z70212-1|CAA94162.1|  406|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    27   2.4  
U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical pr...    26   5.5  
M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.        26   7.3  
AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    26   7.3  
AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal daue...    26   7.3  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    25   9.7  
AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 133 VLLQLQNGFVERYHVPIYLVLSNCKFCFNLSII 231
           V+  L  G+V RY  PI+L+   C F F L ++
Sbjct: 71  VVFDLYEGYVSRYLAPIFLI-DFCAFYFTLILL 102


>Z70212-1|CAA94162.1|  406|Caenorhabditis elegans Hypothetical
           protein R04D3.2 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 109 GRRMQTHAKRNGTVSDLAQNGTGLVPEL 26
           G+R++ HA+  GTV    QN TG+V  L
Sbjct: 90  GQRLRAHAELGGTVLVTEQNLTGVVESL 117


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 170 YRSTNPFCSCSNTPQRRPRWRPTDADPRETQWDCIRSGTK 51
           Y +T  FC  S  P  RP   P    PR TQ      GT+
Sbjct: 54  YDATTGFCYLSRFPTTRPYPPPFPTRPRPTQGHRCYPGTR 93


>U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical
           protein T03G11.4 protein.
          Length = 584

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 142 AATRPSGDQDG-GRRMQTHAKRNG-TVSDLAQNGTGLVPELHHTNTSP 5
           A T   G Q G  R+    A++ G T  ++  N TGL PE+ H N  P
Sbjct: 420 AGTLSQGSQHGFPRKHLDMAEKIGETCHNMYDNPTGLGPEIAHFNMIP 467


>Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  YSPIAFRVGLHPSAAILVAAGACCCSYKMD 157
           +S + FR GLH S  +     A  C +KM+
Sbjct: 38  FSCVVFRKGLHKSLEVAYEKEASGCRFKME 67


>Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  YSPIAFRVGLHPSAAILVAAGACCCSYKMD 157
           +S + FR GLH S  +     A  C +KM+
Sbjct: 38  FSCVVFRKGLHKSLEVAYEKEASGCRFKME 67


>M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 131 PQRRPRWRPTDADPRETQWDCIRSGTKWHWFSSGATPHKHVTT 3
           PQ+     P +  PR  Q +  R   + +W  +  TP+ H+++
Sbjct: 617 PQKPKDESPANGAPRIVQKEIDREDEQENWRETAKTPNGHISS 659


>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 131 PQRRPRWRPTDADPRETQWDCIRSGTKWHWFSSGATPHKHVTT 3
           PQ+     P +  PR  Q +  R   + +W  +  TP+ H+++
Sbjct: 616 PQKPKDESPANGAPRIVQKEIDREDEQENWRETAKTPNGHISS 658


>AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform a protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 131 PQRRPRWRPTDADPRETQWDCIRSGTKWHWFSSGATPHKHVTT 3
           PQ+     P +  PR  Q +  R   + +W  +  TP+ H+++
Sbjct: 617 PQKPKDESPANGAPRIVQKEIDREDEQENWRETAKTPNGHISS 659


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +1

Query: 37   LNQCHFVPDRIQSHCVSRGSASVGRHLG------RRWGVLLQLQNGFVERYHVPIYLVLS 198
            L  C F P R    CV R   SV + L       +   +LL  +   V+R  + +YLV+ 
Sbjct: 1073 LQMCEFFPSRDSHDCVVRPMPSVKKQLTEPVLLYQLVQLLLTYEPQIVQRVALLLYLVMQ 1132

Query: 199  NCKF 210
            +  F
Sbjct: 1133 DNPF 1136


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +1

Query: 37   LNQCHFVPDRIQSHCVSRGSASVGRHLG------RRWGVLLQLQNGFVERYHVPIYLVLS 198
            L  C F P R    CV R   SV + L       +   +LL  +   V+R  + +YLV+ 
Sbjct: 1073 LQMCEFFPSRDSHDCVVRPMPSVKKQLTEPVLLYQLVQLLLTYEPQIVQRVALLLYLVMQ 1132

Query: 199  NCKF 210
            +  F
Sbjct: 1133 DNPF 1136


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +1

Query: 37   LNQCHFVPDRIQSHCVSRGSASVGRHLG------RRWGVLLQLQNGFVERYHVPIYLVLS 198
            L  C F P R    CV R   SV + L       +   +LL  +   V+R  + +YLV+ 
Sbjct: 1073 LQMCEFFPSRDSHDCVVRPMPSVKKQLTEPVLLYQLVQLLLTYEPQIVQRVALLLYLVMQ 1132

Query: 199  NCKF 210
            +  F
Sbjct: 1133 DNPF 1136


>AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.7 protein.
          Length = 536

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 165 FYKSIL*LQQHAPAATKMAADGCRPTRNAMGLYPI 61
           FY+  +    H P    ++ADGC+ TR      PI
Sbjct: 178 FYQESVKDNAHYPVRETLSADGCQLTRGCYDGEPI 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,803,547
Number of Sequences: 27780
Number of extensions: 152436
Number of successful extensions: 433
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)