Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0078
         (331 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   8.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 71  SPIAFRVGLHPSAAILVAAG 130
           SP+  RVG+H  A +    G
Sbjct: 361 SPVDMRVGIHTGAVLAGVLG 380


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 221 CLLLHNIKLEFRSIH 265
           C ++HN ++  RSIH
Sbjct: 573 CEMIHNAQVNKRSIH 587


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 222 VYYCIILNWNFALFILN 272
           VYY +IL W    F ++
Sbjct: 75  VYYIVILAWAIFYFFMS 91


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 207 ILFQFVYYCIILNWNFAL 260
           +LF   + CI ++W F +
Sbjct: 455 LLFLMFFECIAISWAFGV 472


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 207 ILFQFVYYCIILNWNFAL 260
           +LF   + CI ++W F +
Sbjct: 508 LLFLMFFECIAISWAFGV 525


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 225 YYCIILNWNFALFILNKNCN 284
           Y+ I L  +   F  NKNCN
Sbjct: 77  YHRINLKCSLVEFSENKNCN 96


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 234 IILNWNF 254
           II+NWNF
Sbjct: 316 IIINWNF 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,729
Number of Sequences: 438
Number of extensions: 2096
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)